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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • nucleus 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400012249
PGSC0003DMT400023748
PGSC0003DMT400065456 golgi

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G35930.1 PGSC0003DMT400012249 AT4G25200.1 21798944
AT3G52450.1 PGSC0003DMT400065456 AT1G07000.1 23170036
AT3G52450.1 PGSC0003DMT400065456 AT1G07000.1 23170036
AT3G52450.1 PGSC0003DMT400023748 AT5G49830.2 23170036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g007030.2.1 Tomato cytosol 66.23 94.79
PGSC0003DMT400055045 Potato cytosol 65.89 94.31
PGSC0003DMT400055050 Potato cytosol 94.37 72.7
PGSC0003DMT400055051 Potato cytosol 94.37 72.33
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 93.05 69.21
PGSC0003DMT400054949 Potato cytosol 92.72 68.97
PGSC0003DMT400054948 Potato cytosol 55.63 58.95
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 63.24 46.47
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 63.24 46.47
KRH35744 Soybean cytosol 63.24 45.58
KRH68014 Soybean cytosol 62.91 45.24
KRG96257 Soybean cytosol 62.25 44.87
KRG96268 Soybean cytosol 61.92 44.63
KRH32856 Soybean cytosol 56.62 40.71
KRH72176 Soybean cytosol 55.96 40.43
Bra005309.1-P Field mustard cytosol 50.33 39.28
CDX95337 Canola cytosol 52.98 39.12
CDX79645 Canola cytosol 52.65 38.97
CDY59599 Canola cytosol 52.65 38.88
CDY40422 Canola cytosol 52.65 38.59
Bra017278.1-P Field mustard cytosol 52.65 38.59
CDY32070 Canola cytosol 52.65 38.59
AT2G35930.1 Thale cress cytosol 51.99 38.2
Bra023044.1-P Field mustard cytosol 51.66 38.14
CDX84168 Canola cytosol 50.99 37.93
CDX84587 Canola cytosol 51.32 37.9
CDX78096 Canola cytosol 48.68 37.79
CDX75084 Canola cytosol 50.33 37.44
Bra012803.1-P Field mustard cytosol 51.99 37.12
CDY23218 Canola cytosol 48.34 36.87
GSMUA_Achr11P... Banana cytosol 45.36 36.73
Bra006925.1-P Field mustard cytosol 52.65 36.55
AT3G52450.1 Thale cress cytosol 51.99 36.09
Bra033430.1-P Field mustard cytosol 50.66 36.08
PGSC0003DMT400050493 Potato cytosol 47.68 35.64
GSMUA_Achr5P01000_001 Banana cytosol 41.06 34.93
GSMUA_Achr7P03220_001 Banana cytosol 35.76 34.84
GSMUA_Achr10P... Banana cytosol 42.05 34.79
GSMUA_Achr8P30400_001 Banana cytosol 42.05 34.6
PGSC0003DMT400038197 Potato cytosol 50.99 33.92
OQU85086 Sorghum cytosol 44.37 31.38
Solyc01g007040.2.1 Tomato cytosol, nucleus, vacuole 18.54 31.28
TraesCS6D01G367600.1 Wheat cytosol 43.38 30.97
TraesCS6D01G367100.1 Wheat cytosol 43.05 30.95
EES06927 Sorghum cytosol 43.38 30.9
TraesCS6B01G421400.1 Wheat cytosol 42.72 30.71
TraesCS6A01G382300.1 Wheat cytosol 42.72 30.57
Os02t0539200-01 Rice cytosol 44.7 30.54
TraesCS6B01G420600.1 Wheat cytosol 42.38 30.48
TraesCS6A01G382800.1 Wheat cytosol 42.38 30.33
Os04t0686000-01 Rice cytosol 41.39 30.27
TraesCS6B01G421900.1 Wheat cytosol 42.05 30.24
Os01t0865700-00 Rice plastid 40.07 29.73
EES03937 Sorghum plastid 40.07 29.66
PGSC0003DMT400038196 Potato cytosol 40.73 29.43
TraesCS2B01G314500.1 Wheat cytosol 41.72 29.23
HORVU0Hr1G003810.1 Barley cytosol 41.39 29.0
TraesCS3B01G409400.1 Wheat cytosol 39.74 28.78
TraesCS2A01G298000.1 Wheat cytosol 41.06 28.77
TraesCS2D01G296100.1 Wheat cytosol 41.06 28.77
TraesCS3A01G376900.1 Wheat cytosol 39.74 28.71
TraesCS3D01G370000.1 Wheat cytosol 39.74 28.71
Zm00001d016730_P001 Maize cytosol 41.39 28.67
HORVU6Hr1G089560.1 Barley plastid 42.72 28.6
HORVU6Hr1G089590.1 Barley plastid 42.72 28.54
Zm00001d042738_P001 Maize cytosol 38.41 28.43
HORVU3Hr1G083500.1 Barley cytosol 38.74 28.33
PGSC0003DMT400015179 Potato cytosol 37.42 28.04
EES13136 Sorghum cytosol 39.4 27.93
Zm00001d003745_P001 Maize nucleus 39.4 26.56
KXG26241 Sorghum cytosol 40.4 26.41
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 34.11 26.28
HORVU2Hr1G123050.1 Barley cytosol 28.81 25.89
TraesCS2B01G601300.1 Wheat cytosol 34.11 24.12
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 33.77 23.89
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 33.44 23.65
PGSC0003DMT400054946 Potato cytosol 32.12 23.04
PGSC0003DMT400004594 Potato cytosol 29.14 21.62
TraesCS6B01G209000.1 Wheat cytosol 30.13 21.51
TraesCS6D01G167300.1 Wheat cytosol 30.79 21.48
TraesCS6A01G176800.1 Wheat cytosol 30.13 21.06
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 29.47 20.55
PGSC0003DMT400073836 Potato cytosol 27.15 19.57
Os12t0161100-00 Rice cytosol 27.48 18.91
PGSC0003DMT400075778 Potato mitochondrion 27.15 18.55
KXG23010 Sorghum cytosol 27.81 18.5
GSMUA_Achr9P29630_001 Banana cytosol 36.42 17.8
PGSC0003DMT400058621 Potato cytosol, mitochondrion 24.5 16.41
PGSC0003DMT400066588 Potato cytosol 21.52 15.66
PGSC0003DMT400065698 Potato cytosol 19.87 14.29
PGSC0003DMT400012566 Potato cytosol 19.54 13.14
Zm00001d023480_P001 Maize cytosol 23.51 12.7
PGSC0003DMT400002079 Potato cytosol 15.23 11.0
PGSC0003DMT400060272 Potato cytosol 14.24 10.64
HORVU2Hr1G123130.1 Barley cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400054947EnsemblPlantsGene:PGSC0003DMG400021325Gene3D:1.25.10.10GO:GO:0003674GO:GO:0005488InterPro:ARM-like
InterPro:ARM-type_foldInterPro:IPR011989PANTHER:PTHR22849PANTHER:PTHR22849:SF54PGSC:PGSC0003DMG400021325SEG:seg
SUPFAM:SSF48371UniParc:UPI000296C614UniProt:M1BX40MapMan:35.1::
Description
U-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021325]
Coordinates
chr1:-:2922354..2923755
Molecular Weight (calculated)
33529.1 Da
IEP (calculated)
8.277
GRAVY (calculated)
0.027
Length
302 amino acids
Sequence
(BLAST)
001: MQMNSLKRLR SIASENDANK RCMESAGAME FLASIINNNN NSNEVFEEEE GFMSTKDEAL SILYQLKLSE NGLRSLIMSG NGEFIESLTR VMQHGSYESR
101: AYAVMLMKDM FEVSTPTLLL SLKQEFFIQV VQVLRDEISQ KAMKASLQVL VNACPFGRNK VKAAEAGAIR VLVDLLLDSS EKRVCEFILV LLDQICQSAE
201: GRAELLNHPG GLAIVSKKIL RVSKVGSERA IKILHSISKF SSTPSVVQEM LSLGVVAKLC LVLQVDCGSK AKERAREILK FHAKAWMNSP CIPNNLLSSY
301: PF
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.