Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003745_P001 | Maize | nucleus | 88.1 | 90.85 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 69.48 | 74.48 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 68.83 | 73.78 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 68.83 | 73.78 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 68.61 | 73.55 |
| EES06927 | Sorghum | cytosol | 58.23 | 63.44 |
| OQU85086 | Sorghum | cytosol | 58.44 | 63.23 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 34.85 | 51.94 |
| EES13136 | Sorghum | cytosol | 45.24 | 49.06 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 37.23 | 48.45 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 40.91 | 45.99 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 40.91 | 45.99 |
| CDX75084 | Canola | cytosol | 39.83 | 45.32 |
| CDX84168 | Canola | cytosol | 39.83 | 45.32 |
| PGSC0003DMT400055045 | Potato | cytosol | 20.56 | 45.02 |
| CDY40422 | Canola | cytosol | 40.04 | 44.9 |
| CDY32070 | Canola | cytosol | 40.04 | 44.9 |
| Bra017278.1-P | Field mustard | cytosol | 40.04 | 44.9 |
| Bra005309.1-P | Field mustard | cytosol | 37.45 | 44.7 |
| Solyc01g007030.2.1 | Tomato | cytosol | 20.35 | 44.55 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 39.83 | 44.44 |
| Solyc01g007020.2.1 | Tomato | cytosol | 39.18 | 44.36 |
| PGSC0003DMT400054949 | Potato | cytosol | 38.96 | 44.34 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 39.18 | 44.25 |
| EES03937 | Sorghum | plastid | 38.96 | 44.12 |
| AT2G35930.1 | Thale cress | cytosol | 39.18 | 44.04 |
| CDX84587 | Canola | cytosol | 38.96 | 44.01 |
| KRH22633 | Soybean | cytosol, nucleus | 38.31 | 43.92 |
| CDX79645 | Canola | cytosol | 38.74 | 43.87 |
| KRH68014 | Soybean | cytosol | 39.83 | 43.81 |
| Bra023044.1-P | Field mustard | cytosol | 38.74 | 43.77 |
| KRG96257 | Soybean | cytosol | 39.61 | 43.68 |
| KRH26691 | Soybean | cytosol | 36.58 | 43.67 |
| PGSC0003DMT400055050 | Potato | cytosol | 37.01 | 43.62 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 38.31 | 43.6 |
| PGSC0003DMT400050493 | Potato | cytosol | 38.1 | 43.56 |
| CDX95337 | Canola | cytosol | 38.53 | 43.52 |
| CDX78096 | Canola | cytosol | 36.58 | 43.44 |
| KRG96268 | Soybean | cytosol | 39.39 | 43.44 |
| KRH35744 | Soybean | cytosol | 39.39 | 43.44 |
| PGSC0003DMT400055051 | Potato | cytosol | 37.01 | 43.4 |
| CDY59599 | Canola | cytosol | 38.31 | 43.28 |
| CDY23218 | Canola | cytosol | 37.01 | 43.18 |
| Solyc01g007010.2.1 | Tomato | cytosol | 38.1 | 43.14 |
| Solyc11g068920.1.1 | Tomato | cytosol | 37.66 | 43.07 |
| KRH72176 | Soybean | cytosol | 38.96 | 43.06 |
| KRH32856 | Soybean | cytosol | 38.96 | 42.86 |
| PGSC0003DMT400054948 | Potato | cytosol | 25.97 | 42.11 |
| Bra033430.1-P | Field mustard | cytosol | 38.53 | 41.98 |
| Bra006925.1-P | Field mustard | cytosol | 39.39 | 41.84 |
| AT3G52450.1 | Thale cress | cytosol | 38.96 | 41.38 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 16.02 | 41.34 |
| KRH25324 | Soybean | cytosol | 32.47 | 41.32 |
| Bra012803.1-P | Field mustard | cytosol | 37.45 | 40.9 |
| PGSC0003DMT400054947 | Potato | cytosol | 26.41 | 40.4 |
| Solyc01g009330.1.1 | Tomato | cytosol | 37.23 | 40.38 |
| PGSC0003DMT400038197 | Potato | cytosol | 36.8 | 37.44 |
| EES06938 | Sorghum | extracellular | 29.0 | 32.92 |
| KXG23010 | Sorghum | cytosol | 30.09 | 30.62 |
| EES11341 | Sorghum | cytosol | 26.62 | 29.85 |
| KXG19704 | Sorghum | mitochondrion | 29.0 | 29.19 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 37.88 | 28.32 |
| OQU81614 | Sorghum | cytosol | 24.24 | 28.14 |
| EES07426 | Sorghum | cytosol | 25.76 | 27.74 |
| EES05563 | Sorghum | mitochondrion | 27.27 | 27.27 |
| OQU80253 | Sorghum | mitochondrion | 12.34 | 26.15 |
| EER92576 | Sorghum | mitochondrion | 25.11 | 25.55 |
| OQU81548 | Sorghum | mitochondrion | 24.68 | 25.5 |
| OQU81292 | Sorghum | mitochondrion | 11.69 | 25.12 |
| EES05205 | Sorghum | cytosol | 23.81 | 24.28 |
| EER95229 | Sorghum | cytosol | 22.94 | 23.09 |
| KXG22102 | Sorghum | mitochondrion | 21.86 | 22.1 |
| KXG38738 | Sorghum | plastid | 22.73 | 21.26 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1B6PKP9 | InterPro:ARM-like | InterPro:ARM-type_fold |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 |
| InterPro:IPR011989 | InterPro:IPR013083 | EnsemblPlants:KXG26241 | ProteinID:KXG26241 | ProteinID:KXG26241.2 | PFAM:PF04564 |
| PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF49 | SMART:SM00504 | EnsemblPlantsGene:SORBI_3006G075400 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniParc:UPI000B424C7F | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr6:-:43950060..43951792
Molecular Weight (calculated)
48840.9 Da
IEP (calculated)
8.445
GRAVY (calculated)
-0.028
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MERSPAPAPV EVPKFFVCPI SLEVMRDPVT LSSGITYDRD SIERWVFTDG HGDCPVTKLP LGADDLEPTP NHTLRRLIQS WCAAHAVERF PTPRPPVDAD
101: RVAAIVDGAK KKGSGGPGGG QGQQELMAAL RELADIVGES DRNRRCVEGV PEAVEFLVSV VKKHAATTSS SSSKPLLGGC GSQSHSQEES TCGGVPGSPK
201: ACSPEEAALS ILHSLKLSEA SLKRVLDSSD DFVDALASVL RRWPSYRART YAMHLLKAAL SAMQPSRLSS TASTELVEGV VKVVADRTLS PKAIKVALHV
301: LCRLCPWGRN RIKAVEAGAV AALVELLLGD GCGAGGGRSN GKRAWELAAV AIDHLCGCAE GRLELVAHPA GLAVVARAAT RLSATATESA VRALHAVARH
401: SATPAVLQEM LAVGVVARLL YLVQAGAAGD RPRERAREML KMHARVWRGS PCLAAHMASY PC
101: RVAAIVDGAK KKGSGGPGGG QGQQELMAAL RELADIVGES DRNRRCVEGV PEAVEFLVSV VKKHAATTSS SSSKPLLGGC GSQSHSQEES TCGGVPGSPK
201: ACSPEEAALS ILHSLKLSEA SLKRVLDSSD DFVDALASVL RRWPSYRART YAMHLLKAAL SAMQPSRLSS TASTELVEGV VKVVADRTLS PKAIKVALHV
301: LCRLCPWGRN RIKAVEAGAV AALVELLLGD GCGAGGGRSN GKRAWELAAV AIDHLCGCAE GRLELVAHPA GLAVVARAAT RLSATATESA VRALHAVARH
401: SATPAVLQEM LAVGVVARLL YLVQAGAAGD RPRERAREML KMHARVWRGS PCLAAHMASY PC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.