CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 2
extracellular 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016764_P001	Maize	extracellular	92.38	89.95
TraesCS6B01G268300.1	Wheat	extracellular	86.49	86.49
TraesCS6D01G237900.1	Wheat	extracellular	86.24	86.24
TraesCS6A01G256700.1	Wheat	extracellular	86.24	86.24
Os02t0548700-00	Rice	cytosol, extracellular, plastid	87.72	85.61
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	59.46	70.14
GSMUA_Achr1P13220_001	Banana	cytosol	64.86	66.67
GSMUA_Achr6P25670_001	Banana	cytosol	65.36	62.15
PGSC0003DMT400066588	Potato	cytosol	54.05	53.01
Solyc01g107980.2.1	Tomato	cytosol	53.56	52.53
KRH50316	Soybean	cytosol, plasma membrane, plastid	53.32	52.42
VIT_03s0063g00180.t01	Wine grape	cytosol	53.07	52.05
KRH70657	Soybean	cytosol	52.58	51.57
CDY50158	Canola	cytosol	51.6	50.36
Bra038205.1-P	Field mustard	cytosol	51.6	50.36
CDX95458	Canola	cytosol	51.35	50.12
CDX99233	Canola	cytosol, peroxisome, plastid	51.84	50.12
Bra022415.1-P	Field mustard	cytosol	51.11	49.29
Bra022417.1-P	Field mustard	cytosol	51.11	49.29
CDX92328	Canola	cytosol	50.86	48.94
CDY16513	Canola	cytosol	50.61	48.7
Bra014206.1-P	Field mustard	cytosol	50.61	48.7
CDY59286	Canola	cytosol	50.37	48.46
AT3G19380.1	Thale cress	cytosol, golgi, plastid	50.12	48.46
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	49.63	47.98
KXG19704	Sorghum	mitochondrion	34.89	30.94
OQU81614	Sorghum	cytosol	30.22	30.9
EER92576	Sorghum	mitochondrion	34.4	30.84
EES13136	Sorghum	cytosol	31.45	30.05
OQU85086	Sorghum	cytosol	31.2	29.74
EES06927	Sorghum	cytosol	30.47	29.25
EES05563	Sorghum	mitochondrion	33.17	29.22
KXG26241	Sorghum	cytosol	32.92	29.0
EES03937	Sorghum	plastid	28.75	28.68
OQU81548	Sorghum	mitochondrion	29.98	27.29
EES05205	Sorghum	cytosol	30.22	27.15
KXG38738	Sorghum	plastid	31.2	25.71
EER95229	Sorghum	cytosol	28.99	25.71
EES11341	Sorghum	cytosol	25.8	25.49
EES07426	Sorghum	cytosol	26.04	24.71
KXG22102	Sorghum	mitochondrion	27.52	24.51
KXG23010	Sorghum	cytosol	26.54	23.79
OQU80253	Sorghum	mitochondrion	10.32	19.27
OQU81292	Sorghum	mitochondrion	9.58	18.14

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8061043	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:C5XU52	EnsemblPlants:EES06938	ProteinID:EES06938	ProteinID:EES06938.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	EnsemblPlantsGene:SORBI_3004G171700
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001A85C18	InterPro:Ubox_domain	RefSeq:XP_002453962.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:52422097..52423320

Molecular Weight (calculated)

42047.8 Da

IEP (calculated)

8.296

GRAVY (calculated)

0.156

Length

407 amino acids

Sequence
(BLAST)

001: MPGSVPLGLG LDTAGVQVPW YFRCPISLEL MRDPVTVSTG QTYDRASIES WVATGNTTCP VTRAPLADFT LIPNHTLRRL IQEWCVAHRS MGVERIPTPK
101: QPADPDLVRS LVAQGPGLPA LRRLRALARE SDKNRLVMAT HETRAALVEA AFGSGAEEVQ AEAMAVLALV GLGEAEAAAV VGREERVARL GKVLAAGVGV
201: PLEARVNAGA VAEAAASASG AEARAVLGAA EGVMDGLVAL VEEKANARAV RVGIRALFAL CLAKENRPRA VAAGAASALA RRVAEGGAGE PERALAAVER
301: LCRAEGGRDA VVAGAGGGSA AVTALVRAMS GRAAEHAAGA LVAVVGGSEA LQVEAVRAGA MSQLLLMVQG GCSERAKRKA QHLLKLLRSA WPNTDCIANS
401: DDFLQHY

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.