CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90557
KXG31158

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	EER90557	AT4G33940.1	21798944
AT5G09800.1	KXG31158	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	89.71	90.32
TraesCS2B01G315100.1	Wheat	cytosol	79.19	80.27
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	78.97	80.05
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	78.75	79.82
Os04t0418500-01	Rice	plastid	79.19	78.49
GSMUA_Achr8P30420_001	Banana	mitochondrion	41.83	68.5
HORVU2Hr1G074130.1	Barley	plastid	78.97	68.15
EES05205	Sorghum	cytosol	65.77	64.9
GSMUA_Achr6P18140_001	Banana	cytosol	50.56	55.26
GSMUA_Achr10P...	Banana	plastid	45.64	53.12
VIT_04s0044g00870.t01	Wine grape	cytosol	36.47	39.56
PGSC0003DMT400002079	Potato	cytosol	36.47	39.0
VIT_18s0166g00190.t01	Wine grape	plasma membrane	34.45	38.5
KRH53869	Soybean	cytosol	35.79	38.37
Solyc04g071030.1.1	Tomato	cytosol	35.79	37.47
KXG22102	Sorghum	mitochondrion	37.58	36.76
KRH59546	Soybean	cytosol	34.23	36.6
KRH43397	Soybean	cytosol	34.0	36.36
Solyc11g005700.1.1	Tomato	cytosol	33.56	35.71
CDX84538	Canola	cytosol	33.11	35.32
CDY08864	Canola	cytosol	32.89	35.08
Bra024318.1-P	Field mustard	cytosol	32.89	35.08
KRH08734	Soybean	mitochondrion	32.21	34.78
PGSC0003DMT400065698	Potato	cytosol	32.44	34.52
AT5G64660.1	Thale cress	cytosol	32.21	34.29
AT5G09800.1	Thale cress	cytosol	31.32	34.23
CDX75980	Canola	cytosol	32.44	34.2
AT3G18710.1	Thale cress	cytosol	31.54	33.98
KRH36899	Soybean	cytosol	28.19	33.96
KRH70331	Soybean	mitochondrion	30.87	33.91
CDX92262	Canola	cytosol	31.32	33.9
Bra037568.1-P	Field mustard	cytosol	30.65	33.17
CDX82332	Canola	cytosol	31.32	33.02
Bra022347.1-P	Field mustard	cytosol	31.32	33.02
Bra001717.1-P	Field mustard	cytosol	31.1	32.78
CDY71041	Canola	cytosol	30.2	32.69
CDX99325	Canola	cytosol	30.87	32.62
EES06938	Sorghum	extracellular	27.29	29.98
EES03937	Sorghum	plastid	25.73	28.19
OQU81614	Sorghum	cytosol	25.06	28.14
EES06927	Sorghum	cytosol	25.5	26.89
EER95229	Sorghum	cytosol	27.52	26.8
OQU85086	Sorghum	cytosol	25.5	26.7
KXG19704	Sorghum	mitochondrion	27.29	26.58
EES07426	Sorghum	cytosol	23.94	24.94
EES13136	Sorghum	cytosol	23.71	24.88
KXG26241	Sorghum	cytosol	25.5	24.68
EES11341	Sorghum	cytosol	22.37	24.27
EES05563	Sorghum	mitochondrion	24.16	23.38
EER92576	Sorghum	mitochondrion	22.6	22.25
OQU80253	Sorghum	mitochondrion	10.51	21.56
OQU81292	Sorghum	mitochondrion	10.29	21.4
KXG23010	Sorghum	cytosol	20.81	20.48
KXG38738	Sorghum	plastid	22.15	20.04

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1Z5RCT7	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	EnsemblPlants:OQU81548	ProteinID:OQU81548	ProteinID:OQU81548.1
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	SMART:SM00504	EnsemblPlantsGene:SORBI_3006G075801
SUPFAM:SSF57850	UniParc:UPI000B42587C	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:44041315..44043956

Molecular Weight (calculated)

46606.0 Da

IEP (calculated)

8.156

GRAVY (calculated)

0.071

Length

447 amino acids

Sequence
(BLAST)

001: MVRKETAMRL PPQHQALEVK IPSFFRCPIS LDVMRSPVSL CTGVTYDRAS IQRWLDSGNT TCPATMLPLR STDLVPNLTL RSLIAHWAAS AASCSPTATD
101: NSSATRTSSP ASLVRQVASA GVDPSPALRE LAAYLSDDDV DDFEKNALLG AGRAAETVAS VLRRRPEETG VEGVEAATRV LAKILASDGI DDANKKRVAT
201: GLTADAAASA ASLARVMRRG SGGLEARVDA ARLAELLLAN AADEAAKAAV AESSELLAEL VRLVGTVDEK GALERNAVDA GLSCLAAAIC VCGGSRRAWA
301: RGEMVRLGAV QAAVRALRAA TTEPGASAKA LRVLESAVGC AEGRAALCGD AEEAIPAVVG RMMKSGRDGA EAAVAVLWAV CHRYRDRRAA DAAAAAEGGL
401: TRLLLLMQSG CSPAARQMAL ELLKIYRVNA KSCLAGYDSK TTHIMPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.