Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92262 Canola cytosol 77.83 78.21
CDY71041 Canola cytosol 76.87 77.24
CDX99325 Canola cytosol 78.31 76.83
Bra037568.1-P Field mustard cytosol 76.39 76.76
Bra022347.1-P Field mustard cytosol 78.07 76.42
Bra001717.1-P Field mustard cytosol 75.9 74.29
CDX82332 Canola cytosol 75.66 74.06
CDX75980 Canola cytosol 74.94 73.35
AT5G09800.1 Thale cress cytosol 57.83 58.68
AT5G64660.1 Thale cress cytosol 55.66 55.0
VIT_04s0044g00870.t01 Wine grape cytosol 49.88 50.24
KRH43397 Soybean cytosol 50.6 50.24
KRH59546 Soybean cytosol 50.6 50.24
KRH53869 Soybean cytosol 49.64 49.4
KRH36899 Soybean cytosol 39.04 43.67
PGSC0003DMT400065698 Potato cytosol 43.37 42.86
Solyc11g005700.1.1 Tomato cytosol 43.37 42.86
GSMUA_Achr8P30420_001 Banana mitochondrion 28.19 42.86
GSMUA_Achr10P... Banana plastid 31.81 34.38
GSMUA_Achr6P18140_001 Banana cytosol 33.49 33.99
GSMUA_Achr5P01020_001 Banana cytosol 32.77 33.92
OQU81548 Sorghum mitochondrion 33.98 31.54
Zm00001d025379_P001 Maize cytosol, mitochondrion, peroxisome, plastid 33.49 31.31
TraesCS2B01G315100.1 Wheat cytosol 33.01 31.07
Zm00001d016719_P001 Maize cytosol 32.05 31.0
TraesCS2A01G298600.1 Wheat cytosol, mitochondrion, plastid 32.77 30.84
TraesCS2D01G296700.1 Wheat cytosol, mitochondrion, plastid 32.77 30.84
Os04t0418500-01 Rice plastid 33.25 30.6
Zm00001d050689_P001 Maize cytosol 31.08 30.07
EES05205 Sorghum cytosol 32.53 29.8
Os02t0540700-00 Rice plastid 33.01 27.13
HORVU2Hr1G074130.1 Barley plastid 33.01 26.45
Os05t0439400-01 Rice plasma membrane 28.67 26.33
AT2G35930.1 Thale cress cytosol 26.02 26.28
KXG22102 Sorghum mitochondrion 28.92 26.26
Zm00001d038280_P001 Maize cytosol 27.95 25.66
TraesCS1B01G284200.1 Wheat mitochondrion 27.71 25.39
TraesCS1D01G274600.1 Wheat mitochondrion 27.23 24.94
AT3G52450.1 Thale cress cytosol 26.02 24.83
TraesCS1A01G274800.1 Wheat mitochondrion 26.99 24.72
HORVU1Hr1G074180.1 Barley mitochondrion, plastid 26.75 24.5
AT3G19380.1 Thale cress cytosol, golgi, plastid 24.58 24.23
AT1G49780.1 Thale cress cytoskeleton, cytosol, vacuole 23.37 23.04
AT5G37490.1 Thale cress cytosol, nucleus, peroxisome 24.1 22.99
AT3G49810.1 Thale cress cytosol 24.1 22.32
AT1G66160.1 Thale cress cytosol 22.89 22.04
AT5G65920.1 Thale cress cytosol 23.37 21.85
AT3G11840.1 Thale cress cytosol 22.65 20.61
AT3G02840.1 Thale cress mitochondrion 18.8 20.58
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10EntrezGene:821402UniProt:A0A178VJJ8ProteinID:AEE76134.1
EMBL:AK117976InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT3G18710EnsemblPlantsGene:AT3G18710RefSeq:AT3G18710
TAIR:AT3G18710RefSeq:AT3G18710-TAIR-GEnsemblPlants:AT3G18710.1TAIR:AT3G18710.1ProteinID:BAB01797.1EMBL:BT005359
GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005102GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009506GO:GO:0009719
GO:GO:0009987GO:GO:0010200GO:GO:0016567GO:GO:0016740GO:GO:0019538GO:GO:0070696
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083RefSeq:NP_188501.1ProteinID:OAP06509.1PFAM:PF04564
PO:PO:0000013PO:PO:0000037PO:PO:0000056PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PFscan:PS51698
PANTHER:PTHR22849PANTHER:PTHR22849:SF20Symbol:PUB29UniProt:Q9LSA6SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniParc:UPI00000A2167InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
Coordinates
chr3:-:6434082..6436046
Molecular Weight (calculated)
46557.3 Da
IEP (calculated)
8.939
GRAVY (calculated)
-0.033
Length
415 amino acids
Sequence
(BLAST)
001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.