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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plastid 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50158 Canola cytosol 86.7 87.53
Bra038205.1-P Field mustard cytosol 86.46 87.29
CDX95458 Canola cytosol 86.22 87.05
Bra022415.1-P Field mustard cytosol 86.94 86.73
Bra022417.1-P Field mustard cytosol 86.94 86.73
CDX92328 Canola cytosol 86.46 86.05
CDX99233 Canola cytosol, peroxisome, plastid 85.27 85.27
AT1G49780.1 Thale cress cytoskeleton, cytosol, vacuole 80.76 80.76
PGSC0003DMT400066588 Potato cytosol 67.46 68.43
KRH50316 Soybean cytosol, plasma membrane, plastid 67.22 68.36
VIT_03s0063g00180.t01 Wine grape cytosol 66.75 67.71
Solyc01g107980.2.1 Tomato cytosol 66.51 67.47
KRH70657 Soybean cytosol 66.51 67.47
GSMUA_Achr9P08750_001 Banana cytosol, plasma membrane, plastid 43.94 53.62
Zm00001d050712_P001 Maize extracellular, plastid 48.93 50.37
Os02t0548700-00 Rice cytosol, extracellular, plastid 49.88 50.36
EES06938 Sorghum extracellular 48.46 50.12
GSMUA_Achr1P13220_001 Banana cytosol 47.03 50.0
TraesCS6A01G256700.1 Wheat extracellular 48.22 49.88
TraesCS6B01G268300.1 Wheat extracellular 48.22 49.88
TraesCS6D01G237900.1 Wheat extracellular 48.22 49.88
GSMUA_Achr6P25670_001 Banana cytosol 49.17 48.36
Zm00001d016764_P001 Maize extracellular 47.98 48.33
AT2G35930.1 Thale cress cytosol 31.59 32.36
AT3G52450.1 Thale cress cytosol 30.17 29.2
AT5G37490.1 Thale cress cytosol, nucleus, peroxisome 28.74 27.82
AT1G66160.1 Thale cress cytosol 26.84 26.22
AT5G65920.1 Thale cress cytosol 27.08 25.68
AT3G49810.1 Thale cress cytosol 27.08 25.45
AT5G09800.1 Thale cress cytosol 23.99 24.69
AT3G18710.1 Thale cress cytosol 24.23 24.58
AT3G11840.1 Thale cress cytosol 26.6 24.56
AT5G64660.1 Thale cress cytosol 24.47 24.52
AT3G02840.1 Thale cress mitochondrion 20.43 22.69
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1EntrezGene:821472UniProt:A0A178VQ48ProteinID:AEE76233.1
EMBL:AK229923InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT3G19380EnsemblPlantsGene:AT3G19380RefSeq:AT3G19380
TAIR:AT3G19380RefSeq:AT3G19380-TAIR-GEnsemblPlants:AT3G19380.1TAIR:AT3G19380.1EMBL:AY086503ProteinID:BAB02462.1
EMBL:BT025982GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515
GO:GO:0006464GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009605GO:GO:0009607
GO:GO:0009719GO:GO:0009814GO:GO:0009987GO:GO:0010200GO:GO:0016567GO:GO:0016740
GO:GO:0019538GO:GO:0061630InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083RefSeq:NP_566632.1
ProteinID:OAP07012.1PFAM:PF04564PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF56Symbol:PUB25UniProt:Q9LT79
SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850UniParc:UPI000009F47EInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
Coordinates
chr3:-:6714133..6716178
Molecular Weight (calculated)
46058.5 Da
IEP (calculated)
7.341
GRAVY (calculated)
0.030
Length
421 amino acids
Sequence
(BLAST)
001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.