Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY50158 | Canola | cytosol | 86.7 | 87.53 |
Bra038205.1-P | Field mustard | cytosol | 86.46 | 87.29 |
CDX95458 | Canola | cytosol | 86.22 | 87.05 |
Bra022415.1-P | Field mustard | cytosol | 86.94 | 86.73 |
Bra022417.1-P | Field mustard | cytosol | 86.94 | 86.73 |
CDX92328 | Canola | cytosol | 86.46 | 86.05 |
CDX99233 | Canola | cytosol, peroxisome, plastid | 85.27 | 85.27 |
AT1G49780.1 | Thale cress | cytoskeleton, cytosol, vacuole | 80.76 | 80.76 |
PGSC0003DMT400066588 | Potato | cytosol | 67.46 | 68.43 |
KRH50316 | Soybean | cytosol, plasma membrane, plastid | 67.22 | 68.36 |
VIT_03s0063g00180.t01 | Wine grape | cytosol | 66.75 | 67.71 |
Solyc01g107980.2.1 | Tomato | cytosol | 66.51 | 67.47 |
KRH70657 | Soybean | cytosol | 66.51 | 67.47 |
GSMUA_Achr9P08750_001 | Banana | cytosol, plasma membrane, plastid | 43.94 | 53.62 |
Zm00001d050712_P001 | Maize | extracellular, plastid | 48.93 | 50.37 |
Os02t0548700-00 | Rice | cytosol, extracellular, plastid | 49.88 | 50.36 |
EES06938 | Sorghum | extracellular | 48.46 | 50.12 |
GSMUA_Achr1P13220_001 | Banana | cytosol | 47.03 | 50.0 |
TraesCS6A01G256700.1 | Wheat | extracellular | 48.22 | 49.88 |
TraesCS6B01G268300.1 | Wheat | extracellular | 48.22 | 49.88 |
TraesCS6D01G237900.1 | Wheat | extracellular | 48.22 | 49.88 |
GSMUA_Achr6P25670_001 | Banana | cytosol | 49.17 | 48.36 |
Zm00001d016764_P001 | Maize | extracellular | 47.98 | 48.33 |
AT2G35930.1 | Thale cress | cytosol | 31.59 | 32.36 |
AT3G52450.1 | Thale cress | cytosol | 30.17 | 29.2 |
AT5G37490.1 | Thale cress | cytosol, nucleus, peroxisome | 28.74 | 27.82 |
AT1G66160.1 | Thale cress | cytosol | 26.84 | 26.22 |
AT5G65920.1 | Thale cress | cytosol | 27.08 | 25.68 |
AT3G49810.1 | Thale cress | cytosol | 27.08 | 25.45 |
AT5G09800.1 | Thale cress | cytosol | 23.99 | 24.69 |
AT3G18710.1 | Thale cress | cytosol | 24.23 | 24.58 |
AT3G11840.1 | Thale cress | cytosol | 26.6 | 24.56 |
AT5G64660.1 | Thale cress | cytosol | 24.47 | 24.52 |
AT3G02840.1 | Thale cress | mitochondrion | 20.43 | 22.69 |
Protein Annotations
Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:821472 | UniProt:A0A178VQ48 | ProteinID:AEE76233.1 |
EMBL:AK229923 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT3G19380 | EnsemblPlantsGene:AT3G19380 | RefSeq:AT3G19380 |
TAIR:AT3G19380 | RefSeq:AT3G19380-TAIR-G | EnsemblPlants:AT3G19380.1 | TAIR:AT3G19380.1 | EMBL:AY086503 | ProteinID:BAB02462.1 |
EMBL:BT025982 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 |
GO:GO:0009719 | GO:GO:0009814 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0016567 | GO:GO:0016740 |
GO:GO:0019538 | GO:GO:0061630 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | RefSeq:NP_566632.1 |
ProteinID:OAP07012.1 | PFAM:PF04564 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
PO:PO:0001054 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
PO:PO:0025281 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF56 | Symbol:PUB25 | UniProt:Q9LT79 |
SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI000009F47E | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
SEG:seg | : | : | : | : | : |
Description
PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
Coordinates
chr3:-:6714133..6716178
Molecular Weight (calculated)
46058.5 Da
IEP (calculated)
7.341
GRAVY (calculated)
0.030
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.