Factsheet for VIT_03s0063g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066588	Potato	cytosol	77.59	77.59
Solyc01g107980.2.1	Tomato	cytosol	76.39	76.39
KRH50316	Soybean	cytosol, plasma membrane, plastid	75.18	75.36
KRH70657	Soybean	cytosol	75.18	75.18
CDY50158	Canola	cytosol	67.47	67.15
CDY59286	Canola	cytosol	68.43	67.14
Bra038205.1-P	Field mustard	cytosol	67.23	66.91
CDX95458	Canola	cytosol	67.23	66.91
CDY16513	Canola	cytosol	68.19	66.9
Bra014206.1-P	Field mustard	cytosol	68.19	66.9
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	67.71	66.75
AT3G19380.1	Thale cress	cytosol, golgi, plastid	67.71	66.75
Bra022417.1-P	Field mustard	cytosol	66.75	65.64
Bra022415.1-P	Field mustard	cytosol	66.75	65.64
CDX92328	Canola	cytosol	66.51	65.25
CDX99233	Canola	cytosol, peroxisome, plastid	66.02	65.08
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	47.71	57.39
Os02t0548700-00	Rice	cytosol, extracellular, plastid	53.49	53.24
EES06938	Sorghum	extracellular	52.05	53.07
GSMUA_Achr1P13220_001	Banana	cytosol	50.6	53.03
Zm00001d050712_P001	Maize	extracellular, plastid	51.57	52.32
Zm00001d016764_P001	Maize	extracellular	52.29	51.91
TraesCS6B01G268300.1	Wheat	extracellular	49.88	50.86
TraesCS6D01G237900.1	Wheat	extracellular	49.4	50.37
GSMUA_Achr6P25670_001	Banana	cytosol	51.81	50.23
TraesCS6A01G256700.1	Wheat	extracellular	49.16	50.12
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	32.05	32.36
VIT_01s0011g06140.t01	Wine grape	mitochondrion	34.46	32.35
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	31.81	32.12
VIT_06s0009g00320.t01	Wine grape	cytosol	31.81	31.88
VIT_04s0044g01460.t01	Wine grape	cytosol	29.64	30.83
VIT_06s0009g00370.t01	Wine grape	cytosol	28.19	28.89
VIT_04s0044g00870.t01	Wine grape	cytosol	26.51	26.7
VIT_08s0105g00200.t01	Wine grape	cytosol	25.78	26.35
VIT_00s0471g00010.t01	Wine grape	cytosol	26.51	24.61
VIT_18s0166g00190.t01	Wine grape	plasma membrane	22.89	23.75
VIT_18s0001g08790.t01	Wine grape	cytosol	25.54	23.45

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100264205	wikigene:100264205	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM446591
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CAN74163	ProteinID:CAN74163.1	ProteinID:CCB56851	ProteinID:CCB56851.1
UniProt:F6HQ94	EMBL:FN596006	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100264205	wikigene:LOC100264205
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	TIGR:TC64967	TIGR:TC70095	UniParc:UPI00015C8EC3	InterPro:Ubox_domain	ArrayExpress:VIT_03s0063g00180
EnsemblPlantsGene:VIT_03s0063g00180	EnsemblPlants:VIT_03s0063g00180.t01	unigene:Vvi.15249	RefSeq:XP_002285110	RefSeq:XP_002285110.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HQ94]

Coordinates

chr3:-:3794347..3795836

Molecular Weight (calculated)

45100.4 Da

IEP (calculated)

6.764

GRAVY (calculated)

0.123

Length

415 amino acids

Sequence
(BLAST)

001: MPGSLEPLDV GVQIPYHFRC PISLELMCDP VTVSTGQTYD RASIEYWVGT GNTTCPVTRS SLTDFTLIPN HTLRRLIQDW CVANRSFGVE RIPTPKQPAD
101: PASVRSLQTQ VSSQSNPSHT RLSAVKRLRG LARDSDKNRS IIGSHNVQEV LLPVIFSDSE CDSAELKHES LALLVMFPLS ESECAFVASQ PDRVAHLVSL
201: LFHASIEVRV NSAALIEIVV AGTRSLDLRA QISNVDEIFE GITGILNYPL AYPRALKVGI KALFALCLAK QSRHKAVAAG AVTALIDRLA DFEKCDVERA
301: LATVELLCRV PAGCAAFAAH ALTVPLLVRK ILKVSDRATE YAAGALLSLC SAAEQSQREA VSAGVVTQLL LLVQSDCTER AKRKAQLLLK LLRDSWPEDS
401: VVNSDDFGCS DVVPF

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.