Factsheet for Bra014206.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16513	Canola	cytosol	100.0	100.0
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	88.89	89.31
Bra038205.1-P	Field mustard	cytosol	80.38	81.53
Bra022415.1-P	Field mustard	cytosol	79.67	79.86
Bra022417.1-P	Field mustard	cytosol	79.67	79.86
KRH50316	Soybean	cytosol, plasma membrane, plastid	66.9	68.36
VIT_03s0063g00180.t01	Wine grape	cytosol	66.9	68.19
KRH70657	Soybean	cytosol	66.43	67.71
Solyc01g107980.2.1	Tomato	cytosol	66.19	67.47
PGSC0003DMT400066588	Potato	cytosol	65.96	67.23
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	43.26	53.04
EES06938	Sorghum	extracellular	48.7	50.61
Zm00001d050712_P001	Maize	extracellular, plastid	48.7	50.37
Os02t0548700-00	Rice	cytosol, extracellular, plastid	49.65	50.36
GSMUA_Achr1P13220_001	Banana	cytosol	47.04	50.25
TraesCS6D01G237900.1	Wheat	extracellular	47.75	49.63
TraesCS6B01G268300.1	Wheat	extracellular	47.75	49.63
TraesCS6A01G256700.1	Wheat	extracellular	47.75	49.63
Zm00001d016764_P001	Maize	extracellular	48.7	49.28
GSMUA_Achr6P25670_001	Banana	cytosol	48.7	48.13
Bra023044.1-P	Field mustard	cytosol	29.79	30.81
Bra017278.1-P	Field mustard	cytosol	29.55	30.34
Bra005309.1-P	Field mustard	cytosol	27.42	29.97
Bra025442.1-P	Field mustard	mitochondrion	30.97	29.91
Bra033430.1-P	Field mustard	cytosol	29.31	29.25
Bra012803.1-P	Field mustard	cytosol	29.08	29.08
Bra006925.1-P	Field mustard	cytosol	28.84	28.05
Bra039752.1-P	Field mustard	cytosol	25.77	25.83
Bra029975.1-P	Field mustard	cytosol	25.3	24.15
Bra038683.1-P	Field mustard	cytosol	25.3	23.94
Bra024318.1-P	Field mustard	cytosol	23.4	23.63
Bra001424.1-P	Field mustard	cytosol	26.0	23.5
Bra034806.1-P	Field mustard	cytosol	25.77	23.34
Bra037833.1-P	Field mustard	cytosol	24.35	23.25
Bra022347.1-P	Field mustard	cytosol	23.17	23.11
Bra001717.1-P	Field mustard	cytosol	22.7	22.64
Bra037568.1-P	Field mustard	cytosol	21.51	22.03
Bra001067.1-P	Field mustard	mitochondrion	19.15	22.01
Bra040605.1-P	Field mustard	mitochondrion	18.91	21.33

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra014206
EnsemblPlants:Bra014206.1	EnsemblPlants:Bra014206.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009814	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4DCJ1	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000254635C
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT1G49780 (E=8e-189) PUB26 | PUB26 (PLANT U-BOX 26); binding / ubiquitin-protein ligase

Coordinates

chrA08:-:2535087..2536358

Molecular Weight (calculated)

45958.6 Da

IEP (calculated)

6.618

GRAVY (calculated)

0.085

Length

423 amino acids

Sequence
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLELMTDP VTVSTGQTYD RTSIESWIAT GNTSCPVTRL PLSDFTLIPN HTLRRLIQEW CVANRSSGVE RIPTPKQPAD
101: PISVRSLLSQ ASAISGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DVDVGVETSS SEVVTESLAL LVMFHMTEGE CESISSDPGR
201: VGFMTRLLFD SSIENRVNAA ALVEMVLTGS KSTDLKMIIS GSGSVFEGVM DLLRSSVSSR RALKIGIKAL FALCLVKQTR HLAISAGAPG TLIDRLAADF
301: DRCDTERGLA TVELLCRLPE GCAAFGEHAL TVPLLVKTIL RVSDRATEYA AGALLALCTA EERCRDEAAA AGLVTQLLLL VQSDCTERAK RKAQMLLKLL
401: RDSWPDDTLV NSDEFGRSEV APF

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.