Factsheet for Bra029975.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83098	Canola	cytosol	99.1	99.1
AT3G49810.1	Thale cress	cytosol	94.13	93.08
Bra037833.1-P	Field mustard	cytosol	76.98	76.98
VIT_00s0471g00010.t01	Wine grape	cytosol	76.75	76.06
KRH77156	Soybean	cytosol	73.81	72.83
KRH58142	Soybean	cytosol	69.53	69.37
GSMUA_Achr8P04940_001	Banana	cytosol	66.37	68.06
GSMUA_Achr2P08620_001	Banana	cytosol	65.01	66.36
GSMUA_Achr3P25750_001	Banana	cytosol	62.53	64.57
Zm00001d019807_P001	Maize	extracellular	13.54	63.83
KRH28330	Soybean	plastid	74.04	63.81
GSMUA_Achr4P07400_001	Banana	cytosol	58.69	59.91
EER95229	Sorghum	cytosol	61.85	59.7
Zm00001d028294_P001	Maize	cytosol	61.63	59.48
HORVU4Hr1G066070.1	Barley	cytosol	61.4	59.13
TraesCS4D01G237600.1	Wheat	cytosol	60.95	58.82
Zm00001d048008_P001	Maize	cytosol	61.4	58.75
Os03t0232600-01	Rice	cytosol	60.72	58.61
TraesCS4A01G060800.1	Wheat	cytosol	60.72	58.61
TraesCS4B01G236200.1	Wheat	cytosol	60.72	58.61
Zm00001d000044_P001	Maize	cytosol	23.7	45.45
Bra038205.1-P	Field mustard	cytosol	26.19	27.82
Bra022417.1-P	Field mustard	cytosol	26.19	27.49
Bra022415.1-P	Field mustard	cytosol	26.19	27.49
Bra024318.1-P	Field mustard	cytosol	24.61	26.01
Bra014206.1-P	Field mustard	cytosol	24.15	25.3
Bra023044.1-P	Field mustard	cytosol	22.12	23.96
Bra012803.1-P	Field mustard	cytosol	22.8	23.88
Bra017278.1-P	Field mustard	cytosol	22.12	23.79
Bra039752.1-P	Field mustard	cytosol	22.57	23.7
Bra033430.1-P	Field mustard	cytosol	22.35	23.35
Bra037568.1-P	Field mustard	cytosol	21.67	23.24
Bra001717.1-P	Field mustard	cytosol	22.12	23.11
Bra022347.1-P	Field mustard	cytosol	21.9	22.88
Bra006925.1-P	Field mustard	cytosol	22.12	22.53
Bra025442.1-P	Field mustard	mitochondrion	21.9	22.15
Bra040605.1-P	Field mustard	mitochondrion	18.74	22.13
Bra038683.1-P	Field mustard	cytosol	22.12	21.92
Bra005309.1-P	Field mustard	cytosol	18.96	21.71
Bra034806.1-P	Field mustard	cytosol	22.57	21.41
Bra001424.1-P	Field mustard	cytosol	22.57	21.37
Bra001067.1-P	Field mustard	mitochondrion	16.93	20.38

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra029975
EnsemblPlants:Bra029975.1	EnsemblPlants:Bra029975.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	GO:GO:0071472	GO:GO:1901001
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4EMF5	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF105	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000254433E
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT3G49810 (E=6e-198) | U-box domain-containing protein

Coordinates

chrA01:-:15443892..15445223

Molecular Weight (calculated)

48305.4 Da

IEP (calculated)

7.482

GRAVY (calculated)

0.119

Length

443 amino acids

Sequence
(BLAST)

001: MPMFQPLKRD GLVGGDGQVL DLDTAVKDGV LGGVNGGGGV VDEKVDLKAM IKELDLQDIP SVFICPISLE PMQDPVTLCT GQTYERSNIH KWFSLGHLTC
101: PTTMQELWDD AVTPNRTLHH LIYTWFSQKY VLMKKRSEDV QGRAIEVLGT LKKAKGQARV HALSELKHIV VPHLMARKTV VEEGGVSVIS SLLGPFTSHA
201: VGSEVVAILV SLDLDSDSKS GLMQPAKVSL IVDMLNDGSN ETKVNCVRLI RGLVEEKGFR PELVSSHSLL VGLMRLVKDK RHRNGVSPAL GLLKPISAHK
301: QVRSLMVRVG AVPQLVDILP SLDPDCLESA LFVLDALCSD MEGRVAVKDS ANTIPYTVKV LMRVTESCTN YALSILWSVC KLAPEECSPL AVEVGLAAKL
401: LLVIQSGCDP ALKQRSAELL KLCSLHYSDT MFISKCKLTR TIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.