Factsheet for GSMUA_Achr2P08620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P04940_001	Banana	cytosol	89.86	90.28
GSMUA_Achr3P25750_001	Banana	cytosol	84.33	85.31
GSMUA_Achr4P07400_001	Banana	cytosol	74.19	74.19
VIT_18s0001g08790.t01	Wine grape	cytosol	73.73	70.8
VIT_00s0471g00010.t01	Wine grape	cytosol	72.12	70.02
Zm00001d019807_P001	Maize	extracellular	14.75	68.09
PGSC0003DMT400012566	Potato	cytosol	68.66	66.37
AT3G49810.1	Thale cress	cytosol	68.2	66.07
Solyc04g077610.2.1	Tomato	cytosol	63.13	65.39
Bra029975.1-P	Field mustard	cytosol	66.36	65.01
CDX83098	Canola	cytosol	66.36	65.01
CDY53333	Canola	cytosol	66.59	64.65
EER95229	Sorghum	cytosol	67.74	64.05
CDY69247	Canola	cytosol	64.75	63.43
Bra037833.1-P	Field mustard	cytosol	64.52	63.21
CDY18670	Canola	cytosol	64.52	63.21
Zm00001d028294_P001	Maize	cytosol	66.82	63.18
AT5G65920.1	Thale cress	cytosol	64.52	63.06
Os03t0232600-01	Rice	cytosol	66.13	62.53
Zm00001d048008_P001	Maize	cytosol	66.59	62.42
KRH55660	Soybean	cytosol	17.97	62.4
HORVU4Hr1G066070.1	Barley	cytosol	65.9	62.17
TraesCS4B01G236200.1	Wheat	cytosol	64.98	61.44
TraesCS4D01G237600.1	Wheat	cytosol	64.75	61.22
TraesCS4A01G060800.1	Wheat	cytosol	64.52	61.0
Zm00001d000044_P001	Maize	cytosol	23.5	44.16
GSMUA_Achr7P03220_001	Banana	cytosol	21.2	29.68
GSMUA_Achr10P...	Banana	cytosol	24.65	29.32
GSMUA_Achr8P30400_001	Banana	cytosol	24.65	29.16
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	21.89	27.54
GSMUA_Achr11P...	Banana	cytosol	23.5	27.35
GSMUA_Achr5P01000_001	Banana	cytosol	22.12	27.04
GSMUA_Achr6P02470_001	Banana	mitochondrion	23.27	26.58
GSMUA_Achr8P30420_001	Banana	mitochondrion	16.59	26.37
GSMUA_Achr11P...	Banana	cytosol	22.12	26.23
GSMUA_Achr6P11310_001	Banana	cytosol	22.81	26.05
GSMUA_Achr7P18640_001	Banana	mitochondrion	22.12	25.33
GSMUA_Achr10P...	Banana	cytosol	21.89	25.27
GSMUA_Achr5P01020_001	Banana	cytosol	23.27	25.19
GSMUA_Achr3P18060_001	Banana	cytosol	21.89	24.93
GSMUA_Achr11P...	Banana	mitochondrion	23.96	24.47
GSMUA_Achr1P13220_001	Banana	cytosol	22.12	24.24
GSMUA_Achr3P02030_001	Banana	plastid	23.04	23.87
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	21.66	23.62
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	21.66	23.44
GSMUA_Achr6P18140_001	Banana	cytosol	21.66	22.98
GSMUA_Achr6P25670_001	Banana	cytosol	21.89	22.2
GSMUA_Achr10P...	Banana	plastid	19.35	21.88
GSMUA_Achr1P16250_001	Banana	cytosol	20.28	21.62
GSMUA_Achr5P13860_001	Banana	cytosol	14.29	20.46
GSMUA_Achr9P29630_001	Banana	cytosol	23.04	16.18

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G08620_001
EnsemblPlants:GSMUA_Achr2P08620_001	EnsemblPlants:GSMUA_Achr2T08620_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0S6A3
PFAM:PF04564	PFAM:PF05804	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000295328D	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 30 [Source:GMGC_GENE;Acc:GSMUA_Achr2G08620_001]

Coordinates

chr2:-:12553612..12555419

Molecular Weight (calculated)

47081.7 Da

IEP (calculated)

5.858

GRAVY (calculated)

0.196

Length

434 amino acids

Sequence
(BLAST)

001: MPQYQQQASW RLEGGGQVID LETAVKDGIL GGGESGGGLP AGKDGSFGAS AEKLDLKKMI EELDSAAEED VPSVFICPIS LEPMVDPVTL CTGQTYERVH
101: ILKWFSLGHL TCPTTMQELW DDAVTPNQTL HQLIHAWFSQ RYLRLKKRSE DVQGRTAELI LAAHPAVKKT VADSGGVALL SSLLGPFTSH AVGSEVIAIL
201: VNLSLDSDAK ANLMQPAKIS LMVDMLNEGT IDTKINCTRF IEMLMEEKSF RSEVVTRLSL LVALLRLVKD KRHPNGIVAG LSLLKAICFH EQVRSLIVSI
301: GAVPQLVELL PNLTAECLEL ALHILDDLST IAGGCSALKD CAQTIPNAVR LLMRVSEACT QYALSILWAV CKLAPDECAP LAVEAGLAAK LLLVIQSGYN
401: PELKQRAAEL LKLCSLNYTT TLFISKCKLT RTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.