Factsheet for GSMUA_Achr11P12560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P03220_001	Banana	cytosol	43.17	50.97
GSMUA_Achr10P...	Banana	cytosol	46.99	47.12
GSMUA_Achr11P...	Banana	cytosol	47.27	46.38
GSMUA_Achr8P30400_001	Banana	cytosol	46.45	46.32
VIT_06s0009g00370.t01	Wine grape	cytosol	50.27	45.43
VIT_08s0105g00200.t01	Wine grape	cytosol	49.45	44.58
KRH25323	Soybean	cytosol	48.09	43.56
GSMUA_Achr5P01000_001	Banana	cytosol	42.08	43.38
KRH22634	Soybean	cytosol	49.73	43.13
KRH26690	Soybean	cytosol	50.27	43.09
PGSC0003DMT400038196	Potato	cytosol	48.63	42.58
KRG88869	Soybean	cytosol	48.36	42.45
Solyc01g009320.1.1	Tomato	cytosol	48.36	42.34
KRH72180	Soybean	cytosol	26.5	41.81
Solyc06g074140.1.1	Tomato	cytosol	46.17	40.24
KRH68013	Soybean	cytosol	32.51	40.2
Solyc11g068940.1.1	Tomato	cytosol	45.36	39.24
PGSC0003DMT400054946	Potato	cytosol	43.72	38.0
PGSC0003DMT400015179	Potato	cytosol	41.8	37.97
CDY47911	Canola	cytosol	43.72	37.91
CDY01063	Canola	cytosol	44.26	36.82
Solyc01g007050.1.1	Tomato	cytosol	42.08	36.58
CDY08490	Canola	cytosol	43.99	36.43
Bra038683.1-P	Field mustard	cytosol	43.99	36.02
CDY67531	Canola	cytosol	43.72	35.79
Bra034806.1-P	Field mustard	cytosol	44.81	35.12
CDY53920	Canola	cytosol	41.26	34.63
AT3G11840.1	Thale cress	cytosol	41.8	33.55
CDX73849	Canola	cytosol	40.98	32.12
Bra001424.1-P	Field mustard	cytosol	40.98	32.05
GSMUA_Achr1P16250_001	Banana	cytosol	35.25	31.7
GSMUA_Achr3P18060_001	Banana	cytosol	31.97	30.71
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	27.87	29.57
GSMUA_Achr9P29630_001	Banana	cytosol	48.09	28.48
GSMUA_Achr6P02470_001	Banana	mitochondrion	27.6	26.58
GSMUA_Achr5P13860_001	Banana	cytosol	21.58	26.07
GSMUA_Achr1P13220_001	Banana	cytosol	27.87	25.76
GSMUA_Achr7P18640_001	Banana	mitochondrion	26.5	25.59
GSMUA_Achr10P...	Banana	cytosol	26.23	25.53
GSMUA_Achr6P11310_001	Banana	cytosol	26.5	25.53
GSMUA_Achr8P30420_001	Banana	mitochondrion	18.85	25.27
GSMUA_Achr11P...	Banana	mitochondrion	29.23	25.18
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	26.5	24.37
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	25.96	23.69
GSMUA_Achr6P25670_001	Banana	cytosol	27.32	23.36
GSMUA_Achr5P01020_001	Banana	cytosol	24.86	22.69
GSMUA_Achr3P02030_001	Banana	plastid	25.41	22.2
GSMUA_Achr2P08620_001	Banana	cytosol	26.23	22.12
GSMUA_Achr8P04940_001	Banana	cytosol	25.41	21.53
GSMUA_Achr3P25750_001	Banana	cytosol	24.59	20.98
GSMUA_Achr4P07400_001	Banana	cytosol	24.59	20.74
GSMUA_Achr6P18140_001	Banana	cytosol	22.68	20.29
GSMUA_Achr10P...	Banana	plastid	19.67	18.75

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr11G12560_001	EnsemblPlants:GSMUA_Achr11P12560_001
EnsemblPlants:GSMUA_Achr11T12560_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0RRN6	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF104	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000295A9CB	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

Putative E3 ubiquitin-protein ligase PUB23 [Source:GMGC_GENE;Acc:GSMUA_Achr11G12560_001]

Coordinates

chr11:-:11556955..11558169

Molecular Weight (calculated)

40491.3 Da

IEP (calculated)

8.100

GRAVY (calculated)

-0.060

Length

366 amino acids

Sequence
(BLAST)

001: MDSVEVPQYF TCPISLQIMT DPVTTITGMT YDRESIERWL LVDDHPMCPV TKQPLPRDSD LTPNHTLRRL IQAWCVVNAS RGVERIPTPR APVDGPGIRK
101: LVHGLSAPRL QLDSLNLIAA LARENESNRR CMLQYGVAGA MVDVINTCTE RKQMDRIDVA LGVLDSLRAS PDDLKPIAAD SRVLEQLTPD FFQAVLSLVR
201: DRISQRGTKA ALQVLLHAAA WGRNRIKIVE AGGVKEIVEL ELTAPDKRTT EINLGLLNQL CTTADGRAEL VGHAASIATV SKRILRVSSL ADDQGVRILW
301: SLCRYSATTE VLQEMMSLGA VSKLCLVLQA NCPDSVKEKA RLVLRLHSGV WKDSPCLHSY LLSRYT

Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)

001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA

Arabidopsis Description

PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.