Factsheet for GSMUA_Achr8P30420_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P06810_001
GSMUA_Achr6P18810_001
GSMUA_Achr7P23200_001
GSMUA_Achr8P08140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	GSMUA_Achr11P...	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr6P18810_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr7P23200_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr8P08140_001	AT4G33940.1	21798944
AT5G09800.1	GSMUA_Achr3P06810_001	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050689_P001	Maize	cytosol	69.23	44.06
Zm00001d016719_P001	Maize	cytosol	68.86	43.82
GSMUA_Achr6P18140_001	Banana	cytosol	64.84	43.28
EES05205	Sorghum	cytosol	71.06	42.83
GSMUA_Achr10P...	Banana	plastid	58.97	41.93
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	68.13	41.89
OQU81548	Sorghum	mitochondrion	68.5	41.83
Os04t0418500-01	Rice	plastid	67.77	41.02
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	65.2	40.36
TraesCS2B01G315100.1	Wheat	cytosol	65.2	40.36
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	65.2	40.36
Os02t0540700-00	Rice	plastid	71.79	38.81
GSMUA_Achr5P01020_001	Banana	cytosol	53.11	36.16
HORVU2Hr1G074130.1	Barley	plastid	65.57	34.56
VIT_04s0044g00870.t01	Wine grape	cytosol	48.72	32.28
KRH59546	Soybean	cytosol	48.72	31.82
KRH43397	Soybean	cytosol	48.35	31.58
VIT_18s0166g00190.t01	Wine grape	plasma membrane	45.79	31.25
Solyc11g005700.1.1	Tomato	cytosol	47.62	30.95
KRH53869	Soybean	cytosol	46.89	30.7
CDX92262	Canola	cytosol	46.15	30.51
PGSC0003DMT400065698	Potato	cytosol	46.89	30.48
CDX82332	Canola	cytosol	46.52	29.95
CDX75980	Canola	cytosol	46.52	29.95
CDX99325	Canola	cytosol	45.79	29.55
Bra001717.1-P	Field mustard	cytosol	45.79	29.48
Bra022347.1-P	Field mustard	cytosol	45.42	29.25
CDX84538	Canola	cytosol	44.69	29.12
PGSC0003DMT400002079	Potato	cytosol	44.32	28.95
CDY08864	Canola	cytosol	43.96	28.64
Bra024318.1-P	Field mustard	cytosol	43.96	28.64
AT5G09800.1	Thale cress	cytosol	42.86	28.61
Bra037568.1-P	Field mustard	cytosol	43.22	28.57
CDY71041	Canola	cytosol	43.22	28.57
AT3G18710.1	Thale cress	cytosol	42.86	28.19
AT5G64660.1	Thale cress	cytosol	43.22	28.1
KRH08734	Soybean	mitochondrion	42.49	28.02
Solyc04g071030.1.1	Tomato	cytosol	43.59	27.87
KRH70331	Soybean	mitochondrion	41.39	27.76
KRH36899	Soybean	cytosol	36.63	26.95
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	29.67	23.48
GSMUA_Achr7P03220_001	Banana	cytosol	24.91	21.94
GSMUA_Achr1P13220_001	Banana	cytosol	30.77	21.21
GSMUA_Achr11P...	Banana	mitochondrion	32.97	21.18
GSMUA_Achr7P18640_001	Banana	mitochondrion	29.3	21.11
GSMUA_Achr6P02470_001	Banana	mitochondrion	29.3	21.05
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	30.4	20.85
GSMUA_Achr6P11310_001	Banana	cytosol	28.94	20.79
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	29.3	19.95
GSMUA_Achr10P...	Banana	cytosol	26.37	19.73
GSMUA_Achr10P...	Banana	cytosol	27.11	19.68
GSMUA_Achr1P16250_001	Banana	cytosol	29.3	19.66
GSMUA_Achr5P01000_001	Banana	cytosol	25.27	19.44
GSMUA_Achr6P25670_001	Banana	cytosol	30.4	19.39
GSMUA_Achr11P...	Banana	cytosol	25.27	18.85
GSMUA_Achr3P02030_001	Banana	plastid	28.57	18.62
GSMUA_Achr3P25750_001	Banana	cytosol	27.84	17.72
GSMUA_Achr8P30400_001	Banana	cytosol	23.81	17.71
GSMUA_Achr11P...	Banana	cytosol	24.18	17.69
GSMUA_Achr3P18060_001	Banana	cytosol	24.18	17.32
GSMUA_Achr8P04940_001	Banana	cytosol	27.11	17.13
GSMUA_Achr2P08620_001	Banana	cytosol	26.37	16.59
GSMUA_Achr4P07400_001	Banana	cytosol	24.54	15.44
GSMUA_Achr5P13860_001	Banana	cytosol	16.85	15.18
GSMUA_Achr9P29630_001	Banana	cytosol	28.21	12.46

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr8G30420_001	EnsemblPlants:GSMUA_Achr8P30420_001	EnsemblPlants:GSMUA_Achr8T30420_001	InterPro:IPR003613	InterPro:IPR013083	UniProt:M0TUZ4
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	SMART:SM00504	SUPFAM:SSF57850
UniParc:UPI0002955133	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

U-box domain-containing protein 29 [Source:GMGC_GENE;Acc:GSMUA_Achr8G30420_001]

Coordinates

chr8:+:32504280..32505566

Molecular Weight (calculated)

29044.1 Da

IEP (calculated)

8.487

GRAVY (calculated)

0.091

Length

273 amino acids

Sequence
(BLAST)

001: MGRKEARFGQ ALQVKIPSYF RCPISLDVMR SPVSLCTGVT YDRASIQRWL DSGNTTCPAT MLPLPSTDLV PNLTLQRLIG LWSSAYASCS PSSAVGDAPV
101: AGEILRDLRF SASGGDPIPP LRKLAEFLSS DEVDEFDKNN LVNAGAESAA ATVEKALRVM EAASGCAEGR ASICEDGAAA AMAVVRRMVK AGKAGAEAAV
201: AVLWRVCHRF RDRRAVEAVA AAEGVVTKLL LLMQSGCSPA ARQMAADLLK IFRVSSKSCI TGYDTKTTHI MPF

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.