Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 84.41 | 84.86 |
| Solyc11g027820.1.1 | Tomato | cytosol | 14.52 | 67.5 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 64.52 | 65.22 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 62.37 | 63.04 |
| EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 63.44 | 61.78 |
| VIT_18s0041g00290.t01 | Wine grape | plasma membrane | 58.06 | 58.06 |
| TraesCS4A01G352200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 60.75 | 57.65 |
| TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 60.75 | 57.36 |
| TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 60.75 | 57.36 |
| AT1G72175.1 | Thale cress | cytosol, nucleus, plasma membrane | 56.99 | 57.3 |
| CDX72875 | Canola | cytosol, nucleus, plasma membrane | 56.45 | 56.76 |
| CDX96380 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 56.45 | 56.76 |
| Bra016082.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 56.45 | 56.76 |
| PGSC0003DMT400068737 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 53.76 | 54.05 |
| KRH64784 | Soybean | nucleus | 52.15 | 52.15 |
| CDY25740 | Canola | cytosol, nucleus, plasma membrane | 51.61 | 51.34 |
| Bra012331.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 51.61 | 51.34 |
| CDY12526 | Canola | cytosol, nucleus, plasma membrane | 51.08 | 50.8 |
| Solyc11g027810.1.1 | Tomato | plasma membrane | 41.94 | 48.75 |
| AT1G22510.2 | Thale cress | mitochondrion | 45.16 | 41.38 |
| HORVU3Hr1G111110.1 | Barley | plastid | 35.48 | 38.37 |
| TraesCS3B01G567600.1 | Wheat | mitochondrion | 39.78 | 36.1 |
| TraesCS3D01G511300.1 | Wheat | mitochondrion | 39.78 | 35.92 |
| CDY49386 | Canola | nucleus | 36.02 | 29.13 |
| Bra017614.1-P | Field mustard | nucleus | 36.02 | 28.63 |
| CDX72441 | Canola | cytosol, nucleus, peroxisome | 34.41 | 28.44 |
| Bra011479.1-P | Field mustard | cytosol | 34.41 | 27.12 |
| CDX75389 | Canola | cytosol | 34.41 | 27.12 |
| CDX69014 | Canola | cytosol | 34.41 | 25.91 |
| PGSC0003DMT400061164 | Potato | cytosol, nucleus, peroxisome | 31.18 | 25.66 |
| AT4G33940.1 | Thale cress | cytosol | 36.02 | 25.57 |
| Solyc01g103970.2.1 | Tomato | cytosol | 30.65 | 25.11 |
| PGSC0003DMT400061161 | Potato | nucleus | 35.48 | 21.29 |
| Solyc01g103980.2.1 | Tomato | mitochondrion | 34.95 | 20.83 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:DUF1232 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0061630 | EnsemblPlantsGene:GSMUA_Achr6G18810_001 | EnsemblPlants:GSMUA_Achr6P18810_001 |
| EnsemblPlants:GSMUA_Achr6T18810_001 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M0T879 | PFAM:PF06803 | ScanProsite:PS00518 |
| PFscan:PS50089 | PANTHER:PTHR22894 | PANTHER:PTHR22894:SF5 | InterPro:RNF170 | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI00029668BA | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
Putative RING finger protein 170 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18810_001]
Coordinates
chr6:+:13026118..13030634
Molecular Weight (calculated)
21099.0 Da
IEP (calculated)
7.715
GRAVY (calculated)
0.311
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MESPPEDDFC SICHDNFTLP CQANCSHWFC GHCILRVWHH GSALQPCKCP ICRRFITLLI PADAAVQERQ DTGASQVLEN IEKYNRKFGG GPSSIIQRLR
101: DLPFFMRRLL RELIDTQRSL LPLVLRARIF FAMAVSAIYV LSPVDILPEG VFGFVGLLDD LIVLLVVILH LATIYRSVLV YRHGGY
101: DLPFFMRRLL RELIDTQRSL LPLVLRARIF FAMAVSAIYV LSPVDILPEG VFGFVGLLDD LIVLLVVILH LATIYRSVLV YRHGGY
001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
Arabidopsis Description
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.