Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 1
- plasma membrane 1
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra016082.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 100.0 | 100.0 |
CDX72875 | Canola | cytosol, nucleus, plasma membrane | 98.38 | 98.38 |
AT1G72175.1 | Thale cress | cytosol, nucleus, plasma membrane | 92.97 | 92.97 |
CDY25740 | Canola | cytosol, nucleus, plasma membrane | 77.84 | 77.01 |
CDY12526 | Canola | cytosol, nucleus, plasma membrane | 77.3 | 76.47 |
Solyc11g027820.1.1 | Tomato | cytosol | 15.68 | 72.5 |
PGSC0003DMT400068737 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 69.19 | 69.19 |
KRH64784 | Soybean | nucleus | 69.19 | 68.82 |
VIT_18s0041g00290.t01 | Wine grape | plasma membrane | 68.11 | 67.74 |
Solyc11g027810.1.1 | Tomato | plasma membrane | 57.3 | 66.25 |
GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 60.54 | 60.54 |
GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 56.76 | 56.45 |
GSMUA_Achr8P08140_001 | Banana | plasma membrane | 52.43 | 52.72 |
TraesCS4A01G352200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 52.97 | 50.0 |
TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 52.97 | 49.75 |
TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 52.97 | 49.75 |
EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 50.27 | 48.69 |
GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 47.03 | 47.28 |
TraesCS3D01G511300.1 | Wheat | mitochondrion | 42.16 | 37.86 |
TraesCS3B01G567600.1 | Wheat | mitochondrion | 41.62 | 37.56 |
HORVU3Hr1G111110.1 | Barley | plastid | 32.43 | 34.88 |
CDX72441 | Canola | cytosol, nucleus, peroxisome | 37.84 | 31.11 |
CDY49386 | Canola | nucleus | 37.84 | 30.43 |
CDX75389 | Canola | cytosol | 36.22 | 28.39 |
CDX69014 | Canola | cytosol | 35.68 | 26.72 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078E373 | EnsemblPlants:CDX96380 | ProteinID:CDX96380 | ProteinID:CDX96380.1 |
InterPro:DUF1232 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 | GO:GO:0061630 | EnsemblPlantsGene:GSBRNA2T00102533001 |
InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF06803 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 |
PANTHER:PTHR22894 | PANTHER:PTHR22894:SF5 | InterPro:RNF170 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix |
UniPathway:UPA00143 | UniParc:UPI0002541BCB | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
BnaA07g29910D
Coordinates
chrLK031894:+:561251..563013
Molecular Weight (calculated)
20893.8 Da
IEP (calculated)
8.100
GRAVY (calculated)
0.287
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRPISLLV PTEDTIRNRS DSAVSEVLAN LETYNRYFGG RSTSLFQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYIV SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYIV SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
Arabidopsis Description
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.