Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068737 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 85.0 | 18.38 |
| Bra016082.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 72.5 | 15.68 |
| CDX72875 | Canola | cytosol, nucleus, plasma membrane | 72.5 | 15.68 |
| CDX96380 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 72.5 | 15.68 |
| Bra012331.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 72.5 | 15.51 |
| CDY12526 | Canola | cytosol, nucleus, plasma membrane | 72.5 | 15.51 |
| CDY25740 | Canola | cytosol, nucleus, plasma membrane | 72.5 | 15.51 |
| AT1G72175.1 | Thale cress | cytosol, nucleus, plasma membrane | 70.0 | 15.14 |
| VIT_18s0041g00290.t01 | Wine grape | plasma membrane | 70.0 | 15.05 |
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 67.5 | 14.59 |
| GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 67.5 | 14.52 |
| KRH64784 | Soybean | nucleus | 65.0 | 13.98 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 62.5 | 13.59 |
| EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 62.5 | 13.09 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 60.0 | 13.04 |
| TraesCS4A01G352200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 62.5 | 12.76 |
| TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 62.5 | 12.69 |
| TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 62.5 | 12.69 |
| HORVU3Hr1G111110.1 | Barley | plastid | 50.0 | 11.63 |
| TraesCS3B01G567600.1 | Wheat | mitochondrion | 50.0 | 9.76 |
| TraesCS3D01G511300.1 | Wheat | mitochondrion | 50.0 | 9.71 |
| Solyc01g103970.2.1 | Tomato | cytosol | 50.0 | 8.81 |
| Solyc01g103980.2.1 | Tomato | mitochondrion | 47.5 | 6.09 |
| AT1G22510.2 | Thale cress | mitochondrion | 17.5 | 3.45 |
| Solyc11g027810.1.1 | Tomato | plasma membrane | 12.5 | 3.12 |
Protein Annotations
| EnsemblPlants:Solyc11g027820.1.1 | EnsemblPlantsGene:Solyc11g027820.1 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | SUPFAM:SSF57850 |
| UniParc:UPI0002769923 | UniProt:K4D7C5 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr11:-:18980835..18984801
Molecular Weight (calculated)
4496.3 Da
IEP (calculated)
5.314
GRAVY (calculated)
-0.292
Length
40 amino acids
Sequence
(BLAST)
(BLAST)
1: MDGPPENDVC SICHGPFNVP CQANCSHWFC GSTWMHLRDC
001: MNAPPENELC SICHGHFNAP CQSNCSHWFC GNCIMLVWRH GSTLRPCKCP LCRRPISLLV PSEETVRSRN DATVSEVLHD VETYNRVFGG QSSGLIQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI ALILSAIYII SPIDIIPEGV LGVIGLLDDL LIALICFLHV AALYRSVLYS RHGGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI ALILSAIYII SPIDIIPEGV LGVIGLLDDL LIALICFLHV AALYRSVLYS RHGGS
Arabidopsis Description
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:F4I1E4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.