Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G074180.1 | |
| HORVU2Hr1G074130.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G33940.1 | HORVU1Hr1G074180.1 | AT5G09800.1 | 21798944 |
| AT4G33940.1 | HORVU2Hr1G074130.1 | AT5G09800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G511300.1 | Wheat | mitochondrion | 73.84 | 61.65 |
| TraesCS3B01G567600.1 | Wheat | mitochondrion | 71.51 | 60.0 |
| Solyc11g027820.1.1 | Tomato | cytosol | 11.63 | 50.0 |
| GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 38.37 | 35.48 |
| PGSC0003DMT400068737 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 37.79 | 35.14 |
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 37.79 | 35.14 |
| Bra012331.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 37.79 | 34.76 |
| CDY25740 | Canola | cytosol, nucleus, plasma membrane | 37.79 | 34.76 |
| CDY12526 | Canola | cytosol, nucleus, plasma membrane | 37.21 | 34.22 |
| VIT_18s0041g00290.t01 | Wine grape | plasma membrane | 36.05 | 33.33 |
| CDX72875 | Canola | cytosol, nucleus, plasma membrane | 35.47 | 32.97 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 34.88 | 32.61 |
| AT1G72175.1 | Thale cress | cytosol, nucleus, plasma membrane | 34.88 | 32.43 |
| Bra016082.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 34.88 | 32.43 |
| CDX96380 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 34.88 | 32.43 |
| Solyc11g027810.1.1 | Tomato | plasma membrane | 29.07 | 31.25 |
| KRH64784 | Soybean | nucleus | 33.14 | 30.65 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 31.98 | 29.89 |
| AT1G22510.2 | Thale cress | mitochondrion | 30.81 | 26.11 |
| PGSC0003DMT400061164 | Potato | cytosol, nucleus, peroxisome | 27.91 | 21.24 |
| CDX75389 | Canola | cytosol | 29.07 | 21.19 |
| Bra011479.1-P | Field mustard | cytosol | 29.07 | 21.19 |
| Solyc01g103970.2.1 | Tomato | cytosol | 27.91 | 21.15 |
| Bra017614.1-P | Field mustard | nucleus | 27.91 | 20.51 |
| CDY49386 | Canola | nucleus | 27.33 | 20.43 |
| CDX69014 | Canola | cytosol | 29.07 | 20.24 |
| CDX72441 | Canola | cytosol, nucleus, peroxisome | 26.16 | 20.0 |
| AT4G33940.1 | Thale cress | cytosol | 27.33 | 17.94 |
| PGSC0003DMT400061161 | Potato | nucleus | 23.84 | 13.23 |
| Solyc01g103980.2.1 | Tomato | mitochondrion | 23.26 | 12.82 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | UniProt:A0A287MPP3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0061630 | EnsemblPlantsGene:HORVU3Hr1G111110 | EnsemblPlants:HORVU3Hr1G111110.1 | InterPro:IPR001841 | InterPro:IPR013083 | ScanProsite:PS00518 |
| PFscan:PS50089 | PANTHER:PTHR22894 | PANTHER:PTHR22894:SF5 | InterPro:RNF170 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000B4777F8 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
No Description!
Coordinates
chrchr3H:-:682712954..682715255
Molecular Weight (calculated)
18974.2 Da
IEP (calculated)
7.876
GRAVY (calculated)
0.168
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: SASASAAPPL DARCAVCRGV DISLPHQANC SHWFCGHCIV GVWLHGSVLR PSSCPVCRRP ITLLVPSQVA SLLRDEPEIA PVMNRIEQYN GRFAGVPHSM
101: IQWLLDQPFY MRRMLTELRD TCQGPPSNFK IQVALAVSPS MCPLVQFCHL HLSCDVVGPV TNWIMAIKEQ TA
101: IQWLLDQPFY MRRMLTELRD TCQGPPSNFK IQVALAVSPS MCPLVQFCHL HLSCDVVGPV TNWIMAIKEQ TA
001: MNAPPENELC SICHGHFNAP CQSNCSHWFC GNCIMLVWRH GSTLRPCKCP LCRRPISLLV PSEETVRSRN DATVSEVLHD VETYNRVFGG QSSGLIQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI ALILSAIYII SPIDIIPEGV LGVIGLLDDL LIALICFLHV AALYRSVLYS RHGGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI ALILSAIYII SPIDIIPEGV LGVIGLLDDL LIALICFLHV AALYRSVLYS RHGGS
Arabidopsis Description
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:F4I1E4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.