Factsheet for Solyc11g027810.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	91.88	79.46
VIT_18s0041g00290.t01	Wine grape	plasma membrane	67.5	58.06
AT1G72175.1	Thale cress	cytosol, nucleus, plasma membrane	66.25	57.3
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	66.25	57.3
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	66.25	57.3
CDX72875	Canola	cytosol, nucleus, plasma membrane	65.62	56.76
CDY25740	Canola	cytosol, nucleus, plasma membrane	66.25	56.68
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	66.25	56.68
CDY12526	Canola	cytosol, nucleus, plasma membrane	65.0	55.62
AT1G22510.2	Thale cress	mitochondrion	68.12	53.69
KRH64784	Soybean	nucleus	58.12	50.0
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	55.0	47.57
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	48.75	41.94
GSMUA_Achr8P08140_001	Banana	plasma membrane	46.88	40.76
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	46.88	38.27
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	45.62	38.22
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	46.88	38.07
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	46.88	38.07
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	39.38	34.24
TraesCS3D01G511300.1	Wheat	mitochondrion	41.25	32.04
TraesCS3B01G567600.1	Wheat	mitochondrion	40.62	31.71
HORVU3Hr1G111110.1	Barley	plastid	31.25	29.07
Solyc01g103970.2.1	Tomato	cytosol	31.25	22.03
Solyc01g103980.2.1	Tomato	mitochondrion	34.38	17.63
Solyc11g027820.1.1	Tomato	cytosol	3.12	12.5

Protein Annotations

MapMan:35.2	InterPro:DUF1232	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	UniProt:K4D7C4	PFAM:PF06803	PANTHER:PTHR22894
PANTHER:PTHR22894:SF5	InterPro:RNF170	EnsemblPlantsGene:Solyc11g027810.1	EnsemblPlants:Solyc11g027810.1.1	TMHMM:TMhelix	UniParc:UPI00027697F7
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:18977871..18980424

Molecular Weight (calculated)

18235.8 Da

IEP (calculated)

9.059

GRAVY (calculated)

0.322

Length

160 amino acids

Sequence
(BLAST)

001: MLGIETSCIL QVWDHGSALQ ACKCPLCRRP ITLLVPSESA SRLHRDPEVP GVLRRVEQYN RHFGRHANGL LQRMQDLPFL LRRLLRDMTD PQRSLPFVIR
101: ARVYLAMFLS GIYILSPVDL IPEGFLGIIG LLDDLIIMFI CFLHVAALYR SVLLFRHGGS

Best Arabidopsis Sequence Match ( AT1G72175.1 )
(BLAST)

001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.