Factsheet for Bra016082.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	100.0	100.0
CDX72875	Canola	cytosol, nucleus, plasma membrane	98.38	98.38
AT1G72175.1	Thale cress	cytosol, nucleus, plasma membrane	92.97	92.97
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	77.3	76.47
Solyc11g027820.1.1	Tomato	cytosol	15.68	72.5
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	69.19	69.19
KRH64784	Soybean	nucleus	69.19	68.82
VIT_18s0041g00290.t01	Wine grape	plasma membrane	68.11	67.74
Solyc11g027810.1.1	Tomato	plasma membrane	57.3	66.25
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	60.54	60.54
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	56.76	56.45
GSMUA_Achr8P08140_001	Banana	plasma membrane	52.43	52.72
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	52.97	50.0
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	52.97	49.75
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	52.97	49.75
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	50.27	48.69
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	47.03	47.28
TraesCS3D01G511300.1	Wheat	mitochondrion	42.16	37.86
TraesCS3B01G567600.1	Wheat	mitochondrion	41.62	37.56
HORVU3Hr1G111110.1	Barley	plastid	32.43	34.88
Bra017614.1-P	Field mustard	nucleus	37.84	29.91
Bra011479.1-P	Field mustard	cytosol	36.22	28.39

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EnsemblPlantsGene:Bra016082	EnsemblPlants:Bra016082.1	EnsemblPlants:Bra016082.1-P	InterPro:DUF1232
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4DHV5	PFAM:PF06803	PFAM:PF13920
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5	InterPro:RNF170	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002541BCB	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

AT1G72175 (E=2e-091) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA07:+:19512439..19513931

Molecular Weight (calculated)

20893.8 Da

IEP (calculated)

8.100

GRAVY (calculated)

0.287

Length

185 amino acids

Sequence
(BLAST)

001: MNGPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRPISLLV PTEDTIRNRS DSAVSEVLAN LETYNRYFGG RSTSLFQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYIV SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Best Arabidopsis Sequence Match ( AT1G72175.1 )
(BLAST)

001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.