Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 98.98 | 98.48 |
| TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 98.98 | 98.48 |
| EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 83.16 | 85.34 |
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 61.22 | 64.86 |
| Solyc11g027820.1.1 | Tomato | cytosol | 12.76 | 62.5 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 58.16 | 61.96 |
| GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 57.65 | 60.75 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 53.06 | 56.52 |
| AT1G72175.1 | Thale cress | cytosol, nucleus, plasma membrane | 50.51 | 53.51 |
| VIT_18s0041g00290.t01 | Wine grape | plasma membrane | 50.51 | 53.23 |
| CDX96380 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 50.0 | 52.97 |
| Bra016082.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 50.0 | 52.97 |
| PGSC0003DMT400068737 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 49.49 | 52.43 |
| CDX72875 | Canola | cytosol, nucleus, plasma membrane | 49.49 | 52.43 |
| CDY25740 | Canola | cytosol, nucleus, plasma membrane | 48.98 | 51.34 |
| Bra012331.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 48.98 | 51.34 |
| CDY12526 | Canola | cytosol, nucleus, plasma membrane | 48.47 | 50.8 |
| KRH64784 | Soybean | nucleus | 47.45 | 50.0 |
| Solyc11g027810.1.1 | Tomato | plasma membrane | 38.27 | 46.88 |
| AT1G22510.2 | Thale cress | mitochondrion | 41.33 | 39.9 |
| PGSC0003DMT400061164 | Potato | cytosol, nucleus, peroxisome | 30.61 | 26.55 |
| Bra011479.1-P | Field mustard | cytosol | 31.63 | 26.27 |
| CDX75389 | Canola | cytosol | 31.63 | 26.27 |
| CDY49386 | Canola | nucleus | 30.1 | 25.65 |
| Bra017614.1-P | Field mustard | nucleus | 30.61 | 25.64 |
| Solyc01g103970.2.1 | Tomato | cytosol | 29.59 | 25.55 |
| CDX72441 | Canola | cytosol, nucleus, peroxisome | 29.08 | 25.33 |
| CDX69014 | Canola | cytosol | 31.12 | 24.7 |
| AT4G33940.1 | Thale cress | cytosol | 29.59 | 22.14 |
| Solyc01g103980.2.1 | Tomato | mitochondrion | 30.1 | 18.91 |
| PGSC0003DMT400061161 | Potato | nucleus | 29.59 | 18.71 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:DUF1232 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016740 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF06803 | PFAM:PF13920 | ScanProsite:PS00518 |
| PFscan:PS50089 | PANTHER:PTHR22894 | PANTHER:PTHR22894:SF5 | InterPro:RNF170 | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4A01G352200 | EnsemblPlants:TraesCS4A01G352200.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:627813987..627816812
Molecular Weight (calculated)
22113.1 Da
IEP (calculated)
7.450
GRAVY (calculated)
0.268
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAAAASSS ASPVPPEDDV CSVCHDRFRI PCQANCSHWF CGECIIRVWN HGAAVQPCKC PICRRLINLL VPANVSDDQN DDPQLQRVLG EIQHYNHIFG
101: GAPRSLTQRL QDLPFFIRRL FRELMDPQRT LPLVFRARMI LMVILSGVYV LSPVDILPES VLGLFGFFDD FLILVIVFLH LAAVYRSLLL YRHGGH
101: GAPRSLTQRL QDLPFFIRRL FRELMDPQRT LPLVFRARMI LMVILSGVYV LSPVDILPES VLGLFGFFDD FLILVIVFLH LAAVYRSLLL YRHGGH
001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
Arabidopsis Description
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.