Factsheet for PGSC0003DMT400068737

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g027810.1.1	Tomato	plasma membrane	79.46	91.88
Solyc11g027820.1.1	Tomato	cytosol	18.38	85.0
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	69.19	69.19
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	69.19	69.19
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	69.73	68.98
CDY25740	Canola	cytosol, nucleus, plasma membrane	69.73	68.98
AT1G72175.1	Thale cress	cytosol, nucleus, plasma membrane	68.65	68.65
CDX72875	Canola	cytosol, nucleus, plasma membrane	68.65	68.65
CDY12526	Canola	cytosol, nucleus, plasma membrane	68.65	67.91
VIT_18s0041g00290.t01	Wine grape	plasma membrane	68.11	67.74
KRH64784	Soybean	nucleus	62.16	61.83
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	59.46	59.46
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	54.05	53.76
AT1G22510.2	Thale cress	mitochondrion	58.92	53.69
GSMUA_Achr8P08140_001	Banana	plasma membrane	50.81	51.09
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	51.35	49.74
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	52.43	49.49
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	52.43	49.24
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	52.43	49.24
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	45.95	46.2
TraesCS3D01G511300.1	Wheat	mitochondrion	43.78	39.32
TraesCS3B01G567600.1	Wheat	mitochondrion	43.24	39.02
HORVU3Hr1G111110.1	Barley	plastid	35.14	37.79
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	38.38	31.42
PGSC0003DMT400061161	Potato	nucleus	38.38	22.9

Protein Annotations

EntrezGene:102578695	Gene3D:3.30.40.10	MapMan:35.2	InterPro:DUF1232	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:M1CJF3	PFAM:PF06803	EnsemblPlantsGene:PGSC0003DMG400026730	PGSC:PGSC0003DMG400026730	EnsemblPlants:PGSC0003DMT400068737
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5	InterPro:RNF170	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000295C327	RefSeq:XP_006339364.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026730]

Coordinates

chr11:+:15750881..15758502

Molecular Weight (calculated)

20959.8 Da

IEP (calculated)

7.455

GRAVY (calculated)

0.248

Length

185 amino acids

Sequence
(BLAST)

001: MDGPPENDVC SICHGPFHVP CQANCSHWFC ASCILQVWDH GSALQACKCP LCRRPITLLV PSESVSRLHQ DPEVPEVLRR VEQYNRHFGQ HANGLLQRMQ
101: DLPFLLRRLL RDMTDPQRSL PFVIRARVYL AVFLSGIYVL SPVDLIPEGF VGIIGLLDDL IIMFICFLHV AALYRSVLLF RHGGS

Best Arabidopsis Sequence Match ( AT1G72175.1 )
(BLAST)

001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.