Factsheet for VIT_18s0041g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g027820.1.1	Tomato	cytosol	15.05	70.0
AT1G72175.1	Thale cress	cytosol, nucleus, plasma membrane	67.74	68.11
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	67.74	68.11
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	67.74	68.11
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	67.74	68.11
Solyc11g027810.1.1	Tomato	plasma membrane	58.06	67.5
CDX72875	Canola	cytosol, nucleus, plasma membrane	66.67	67.03
KRH64784	Soybean	nucleus	66.67	66.67
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	64.52	64.17
CDY25740	Canola	cytosol, nucleus, plasma membrane	64.52	64.17
CDY12526	Canola	cytosol, nucleus, plasma membrane	63.98	63.64
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	58.06	58.06
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	57.53	57.84
AT1G22510.2	Thale cress	mitochondrion	59.14	54.19
GSMUA_Achr8P08140_001	Banana	plasma membrane	52.69	53.26
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	52.69	51.31
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	53.23	50.51
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	53.23	50.25
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	53.23	50.25
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	45.7	46.2
TraesCS3D01G511300.1	Wheat	mitochondrion	40.86	36.89
TraesCS3B01G567600.1	Wheat	mitochondrion	40.32	36.59
HORVU3Hr1G111110.1	Barley	plastid	33.33	36.05

Protein Annotations

EntrezGene:100247708	wikigene:100247708	Gene3D:3.30.40.10	MapMan:35.2	ProteinID:CBI39347	ProteinID:CBI39347.3
UniProt:D7U9D3	InterPro:DUF1232	EMBL:FN596744	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100247708	wikigene:LOC100247708	PFAM:PF00097	PFAM:PF06803
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5	InterPro:RNF170	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00015CCEC8	ArrayExpress:VIT_18s0041g00290	EnsemblPlantsGene:VIT_18s0041g00290	EnsemblPlants:VIT_18s0041g00290.t01
unigene:Vvi.20017	RefSeq:XP_002264470	RefSeq:XP_002264470.1	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:24707447..24716888

Molecular Weight (calculated)

20933.9 Da

IEP (calculated)

8.217

GRAVY (calculated)

0.324

Length

186 amino acids

Sequence
(BLAST)

001: MEEGPPANDV CSVCHGGFNI PFQANCSHWF CGNCILLVWQ HGSALQPCKC PLCRRQITLL VPAGASQRQC NDPEVSAIVG RVERYNRLFG RCDSSLFQRM
101: RDLPFLLRRL LRELMDPQRS LPLLIRARVY FAMLTSIIYI VSPVDIIPEG VVGILGLLDD FIIAFICFLH IAAIYRSVLV HRHGGP

Best Arabidopsis Sequence Match ( AT1G72175.1 )
(BLAST)

001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.