CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	98.38	98.38
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	98.38	98.38
AT1G72175.1	Thale cress	cytosol, nucleus, plasma membrane	91.89	91.89
CDY25740	Canola	cytosol, nucleus, plasma membrane	77.84	77.01
CDY12526	Canola	cytosol, nucleus, plasma membrane	77.3	76.47
Solyc11g027820.1.1	Tomato	cytosol	15.68	72.5
KRH64784	Soybean	nucleus	69.19	68.82
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	68.65	68.65
VIT_18s0041g00290.t01	Wine grape	plasma membrane	67.03	66.67
Solyc11g027810.1.1	Tomato	plasma membrane	56.76	65.62
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	60.0	60.0
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	56.76	56.45
GSMUA_Achr8P08140_001	Banana	plasma membrane	52.97	53.26
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	52.43	49.49
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	52.43	49.24
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	52.43	49.24
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	49.19	47.64
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	45.95	46.2
TraesCS3D01G511300.1	Wheat	mitochondrion	42.7	38.35
TraesCS3B01G567600.1	Wheat	mitochondrion	42.16	38.05
HORVU3Hr1G111110.1	Barley	plastid	32.97	35.47
CDX72441	Canola	cytosol, nucleus, peroxisome	37.3	30.67
CDY49386	Canola	nucleus	37.3	30.0
CDX75389	Canola	cytosol	35.68	27.97
CDX69014	Canola	cytosol	35.14	26.32

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078C7T3	EnsemblPlants:CDX72875	ProteinID:CDX72875	ProteinID:CDX72875.1
InterPro:DUF1232	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00103284001
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF06803	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR22894	PANTHER:PTHR22894:SF5	InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix
UniPathway:UPA00143	UniParc:UPI0004EF37FD	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

BnaC06g33230D

Coordinates

chrLK031797:+:848488..850147

Molecular Weight (calculated)

20877.8 Da

IEP (calculated)

8.100

GRAVY (calculated)

0.314

Length

185 amino acids

Sequence
(BLAST)

001: MNGPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRPISLLV PTEDTIRNRS DSAVSEVLAN LETYNRYFGG RSTSLIQRMQ
101: DLPFLLRRLL REMMDSQRTL PLVIRARVYI AMILSVVYIV SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Best Arabidopsis Sequence Match ( AT1G72175.1 )
(BLAST)

001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.