Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016082.1-P | Field mustard | cytosol, endoplasmic reticulum, plasma membrane | 92.97 | 92.97 |
| CDX96380 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 92.97 | 92.97 |
| CDX72875 | Canola | cytosol, nucleus, plasma membrane | 91.89 | 91.89 |
| Solyc11g027820.1.1 | Tomato | cytosol | 15.14 | 70.0 |
| PGSC0003DMT400068737 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 68.65 | 68.65 |
| AT1G22510.2 | Thale cress | mitochondrion | 74.59 | 67.98 |
| VIT_18s0041g00290.t01 | Wine grape | plasma membrane | 68.11 | 67.74 |
| KRH64784 | Soybean | nucleus | 67.03 | 66.67 |
| Solyc11g027810.1.1 | Tomato | plasma membrane | 57.3 | 66.25 |
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 60.54 | 60.54 |
| GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 57.3 | 56.99 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 52.97 | 53.26 |
| TraesCS4A01G352200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 53.51 | 50.51 |
| TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 53.51 | 50.25 |
| TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 53.51 | 50.25 |
| EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 50.81 | 49.21 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 47.57 | 47.83 |
| TraesCS3D01G511300.1 | Wheat | mitochondrion | 42.16 | 37.86 |
| TraesCS3B01G567600.1 | Wheat | mitochondrion | 41.62 | 37.56 |
| HORVU3Hr1G111110.1 | Barley | plastid | 32.43 | 34.88 |
| AT4G33940.1 | Thale cress | cytosol | 38.92 | 27.48 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:843549 | UniProt:A0A178W9L9 | ProteinID:AEE35285.1 | EMBL:AF370357 |
| ArrayExpress:AT1G72175 | EnsemblPlantsGene:AT1G72175 | RefSeq:AT1G72175 | TAIR:AT1G72175 | RefSeq:AT1G72175-TAIR-G | EnsemblPlants:AT1G72175.1 |
| TAIR:AT1G72175.1 | EMBL:AY059087 | EMBL:AY084686 | InterPro:DUF1232 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0016874 | GO:GO:0019538 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_565037.1 | ProteinID:OAP14073.1 | PFAM:PF06803 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR22894 | PANTHER:PTHR22894:SF5 | UniProt:Q93WJ5 | InterPro:RNF170 |
| SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000005EBEF | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
Coordinates
chr1:+:27157875..27159735
Molecular Weight (calculated)
20920.9 Da
IEP (calculated)
8.105
GRAVY (calculated)
0.269
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.