Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72441 | Canola | cytosol, nucleus, peroxisome | 62.98 | 73.33 |
| Bra017614.1-P | Field mustard | nucleus | 65.27 | 73.08 |
| CDY49386 | Canola | nucleus | 64.12 | 73.04 |
| CDX75389 | Canola | cytosol | 63.74 | 70.76 |
| Bra011479.1-P | Field mustard | cytosol | 63.36 | 70.34 |
| CDX69014 | Canola | cytosol | 63.74 | 67.61 |
| PGSC0003DMT400061164 | Potato | cytosol, nucleus, peroxisome | 35.88 | 41.59 |
| Solyc01g103970.2.1 | Tomato | cytosol | 35.88 | 41.41 |
| AT1G72175.1 | Thale cress | cytosol, nucleus, plasma membrane | 27.48 | 38.92 |
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 25.95 | 36.76 |
| GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 25.57 | 36.02 |
| PGSC0003DMT400061161 | Potato | nucleus | 41.6 | 35.16 |
| Solyc01g103980.2.1 | Tomato | mitochondrion | 40.84 | 34.29 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 24.05 | 34.24 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 23.66 | 33.7 |
| TraesCS4A01G352200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 22.14 | 29.59 |
| TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 22.14 | 29.44 |
| TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 22.14 | 29.44 |
| EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 20.99 | 28.8 |
| HORVU3Hr1G111110.1 | Barley | plastid | 17.94 | 27.33 |
| AT1G22510.2 | Thale cress | mitochondrion | 20.99 | 27.09 |
| TraesCS3B01G567600.1 | Wheat | mitochondrion | 20.99 | 26.83 |
| TraesCS3D01G511300.1 | Wheat | mitochondrion | 20.61 | 26.21 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:829539 | ProteinID:AEE86297.1 | ArrayExpress:AT4G33940 | EnsemblPlantsGene:AT4G33940 |
| RefSeq:AT4G33940 | TAIR:AT4G33940 | RefSeq:AT4G33940-TAIR-G | EnsemblPlants:AT4G33940.1 | TAIR:AT4G33940.1 | Unigene:At.31536 |
| EMBL:BT021998 | EMBL:BT024492 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0010200 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_567943.1 | PFAM:PF00097 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR22894 | PANTHER:PTHR22894:SF4 | UniProt:Q501G9 |
| InterPro:RNF170 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0000162B87 | InterPro:Znf_C3HC4_RING-type |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | : | : | : |
Description
At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
Coordinates
chr4:+:16266019..16267884
Molecular Weight (calculated)
30001.2 Da
IEP (calculated)
5.976
GRAVY (calculated)
-0.158
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.