Factsheet for Bra011479.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75389	Canola	cytosol	98.73	98.73
CDX69014	Canola	cytosol	97.46	93.12
Bra017614.1-P	Field mustard	nucleus	73.31	73.93
AT4G33940.1	Thale cress	cytosol	70.34	63.36
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	40.68	42.48
Solyc01g103970.2.1	Tomato	cytosol	38.98	40.53
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	28.81	36.76
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	28.81	36.36
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	28.39	36.22
Solyc01g103980.2.1	Tomato	mitochondrion	47.03	35.58
GSMUA_Achr8P08140_001	Banana	plasma membrane	27.54	35.33
PGSC0003DMT400061161	Potato	nucleus	45.34	34.52
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	27.12	34.41
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	26.27	33.7
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	26.27	31.63
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	26.27	31.47
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	26.27	31.47
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	24.15	29.84
HORVU3Hr1G111110.1	Barley	plastid	21.19	29.07
TraesCS3B01G567600.1	Wheat	mitochondrion	22.88	26.34
TraesCS3D01G511300.1	Wheat	mitochondrion	22.88	26.21

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EnsemblPlantsGene:Bra011479	EnsemblPlants:Bra011479.1	EnsemblPlants:Bra011479.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4D4S4	PFAM:PF00097
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF4	InterPro:RNF170	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002545AB8	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

AT4G33940 (E=4e-089) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:-:2012544..2013682

Molecular Weight (calculated)

26763.5 Da

IEP (calculated)

7.041

GRAVY (calculated)

-0.115

Length

236 amino acids

Sequence
(BLAST)

001: MEVKTDEVNA AATETHGLSE PEEASNAVVL ADGAVTTEER KKTQSETPPE DDCCPICFGS FTVPCRGDCG HWYCGSCILQ YWNYAAVSRP CKCPMCVRHI
101: TKLSPEASLQ QRQEPEVKEV LAKIRRYNRL FVGGLTGFLQ KVQELPLLMK RMVWHIMDPD TTNLHFNEVR IFAMLMSTLY TATEFNFIPT GGFRIVTVFE
201: FSAIAMILIL RLVGVYRRRR LAQRVRHVAA AELEPE

Best Arabidopsis Sequence Match ( AT4G33940.1 )
(BLAST)

001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL

Arabidopsis Description

At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.