Factsheet for PGSC0003DMT400061164

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400065698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33940.1	PGSC0003DMT400065698	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103970.2.1	Tomato	cytosol	85.84	85.46
CDX72441	Canola	cytosol, nucleus, peroxisome	41.59	41.78
Bra011479.1-P	Field mustard	cytosol	42.48	40.68
CDX75389	Canola	cytosol	42.48	40.68
Bra017614.1-P	Field mustard	nucleus	41.59	40.17
CDY49386	Canola	nucleus	40.71	40.0
CDX69014	Canola	cytosol	42.48	38.87
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	31.42	38.38
AT4G33940.1	Thale cress	cytosol	41.59	35.88
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	26.11	31.89
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	25.66	31.18
GSMUA_Achr8P08140_001	Banana	plasma membrane	25.22	30.98
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	25.22	30.98
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	26.11	30.89
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	26.55	30.61
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	26.11	29.95
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	26.11	29.95
PGSC0003DMT400061161	Potato	nucleus	38.94	28.39
HORVU3Hr1G111110.1	Barley	plastid	21.24	27.91
TraesCS3B01G567600.1	Wheat	mitochondrion	23.45	25.85
TraesCS3D01G511300.1	Wheat	mitochondrion	23.01	25.24

Protein Annotations

EntrezGene:102601943	Gene3D:3.30.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1C761	PFAM:PF13445	EnsemblPlantsGene:PGSC0003DMG400023801
PGSC:PGSC0003DMG400023801	EnsemblPlants:PGSC0003DMT400061164	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF4
InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000294FD59	RefSeq:XP_006349360.1
InterPro:Znf-RING_LisH	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

Armadillo repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023801]

Coordinates

chr1:+:80628607..80633079

Molecular Weight (calculated)

26281.7 Da

IEP (calculated)

8.579

GRAVY (calculated)

0.159

Length

226 amino acids

Sequence
(BLAST)

001: MRIMKNPNIS SSIKDGDVKM EEEGSVKRRE SEKPPEDDCC PICFGNFSIP CKTNCGHWFC ASCILQLWYY RSTLRRCKCP ICCCLISKLV PEASLLAQQE
101: EDVVELLKKI RRYNHLYISG AYGIFLKVLA LPLLTRRVLR ALMDTLMDPD QVRLNYYLMR ILALFLSWIY CSCEFQFIPT GGLGIWRLFD ICAIATVAIF
201: YLVGLYHRWV LRRRVRQLAV LPIHPD

Best Arabidopsis Sequence Match ( AT4G33940.1 )
(BLAST)

001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL

Arabidopsis Description

At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.