Factsheet for Bra017614.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49386	Canola	nucleus	96.15	97.83
CDX72441	Canola	cytosol, nucleus, peroxisome	82.91	86.22
Bra011479.1-P	Field mustard	cytosol	73.93	73.31
AT4G33940.1	Thale cress	cytosol	73.08	65.27
Solyc01g103970.2.1	Tomato	cytosol	40.6	41.85
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	40.17	41.59
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	30.34	38.38
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	29.91	37.84
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	28.63	36.02
GSMUA_Achr8P08140_001	Banana	plasma membrane	27.78	35.33
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	27.78	34.76
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	26.92	34.24
Solyc01g103980.2.1	Tomato	mitochondrion	43.59	32.69
PGSC0003DMT400061161	Potato	nucleus	43.16	32.58
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	25.64	30.61
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	25.64	30.46
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	25.64	30.46
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	24.36	29.84
HORVU3Hr1G111110.1	Barley	plastid	20.51	27.91
TraesCS3B01G567600.1	Wheat	mitochondrion	22.65	25.85
TraesCS3D01G511300.1	Wheat	mitochondrion	22.65	25.73

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EnsemblPlantsGene:Bra017614	EnsemblPlants:Bra017614.1	EnsemblPlants:Bra017614.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4DM82
PFAM:PF00097	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF4	InterPro:RNF170
SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000254117B	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:	:	:	:

Description

AT4G33940 (E=5e-106) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:+:29322824..29324001

Molecular Weight (calculated)

26946.7 Da

IEP (calculated)

5.757

GRAVY (calculated)

-0.186

Length

234 amino acids

Sequence
(BLAST)

001: MEVTADEVLP EVNATAAEFL DQNEPAEEEQ MERDNGGERK RESETPPEDD CCPICFSSFT VPCRGNCGHW YCGSCILQYW NYAAVSKPCK CPMCVRHITT
101: LSPEASLQER QEQEVKEVLA KIRRYNRLFV GGLTGFLQKL KELPLLIKRM VWRMMDPDTN TLYFHEVRIF AMLMSTLYTA AEFSFIPTGG FRIVTVFDYC
201: AIAMILILRV VGIYRRRRLA QRVRHIAAAE LEPE

Best Arabidopsis Sequence Match ( AT4G33940.1 )
(BLAST)

001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL

Arabidopsis Description

At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.