Factsheet for PGSC0003DMT400061161

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400065698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33940.1	PGSC0003DMT400065698	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103980.2.1	Tomato	mitochondrion	82.26	81.73
Bra011479.1-P	Field mustard	cytosol	34.52	45.34
CDX75389	Canola	cytosol	34.52	45.34
CDX72441	Canola	cytosol, nucleus, peroxisome	32.9	45.33
CDY49386	Canola	nucleus	32.58	43.91
CDX69014	Canola	cytosol	34.52	43.32
Bra017614.1-P	Field mustard	nucleus	32.58	43.16
AT4G33940.1	Thale cress	cytosol	35.16	41.6
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	28.39	38.94
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	22.9	38.38
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	21.94	36.76
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	21.29	35.48
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	20.65	34.78
GSMUA_Achr8P08140_001	Banana	plasma membrane	19.68	33.15
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	18.71	29.59
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	18.71	29.44
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	18.71	29.44
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	16.77	27.23
TraesCS3B01G567600.1	Wheat	mitochondrion	17.1	25.85
TraesCS3D01G511300.1	Wheat	mitochondrion	17.1	25.73
HORVU3Hr1G111110.1	Barley	plastid	13.23	23.84

Protein Annotations

EntrezGene:102602273	Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	UniProt:M1C760	PFAM:PF00097	EnsemblPlantsGene:PGSC0003DMG400023800	PGSC:PGSC0003DMG400023800
EnsemblPlants:PGSC0003DMT400061161	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF4	InterPro:RNF170
SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00029513F3	RefSeq:XP_006349362.1	InterPro:Znf_C3HC4_RING-type
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

Armadillo repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023800]

Coordinates

chr1:+:80633802..80637557

Molecular Weight (calculated)

34984.6 Da

IEP (calculated)

4.744

GRAVY (calculated)

-0.366

Length

310 amino acids

Sequence
(BLAST)

001: MKFFLNSIPL RNRRQNPNPI PPSPAMLSDL APDSGDGRQE EAASSSSAAV MNSDDEEEDM GYESPENEVS TTSFSGTEIE DEQEGNREPT AEDEDRRELD
101: GASSKSLVVV EAENAFLRTE KPPTDDCCPI CFGNFVVPCR GPCGHWYCGG CILQYWNYGA ALQPCNCPMC SRKLTDLTPE ASLYSQQDAE VIEVLKKVRK
201: YNRLFIGGTY GLMLKVLGLP FYMKRVFNEM MNPDRPGAHL NKLRIFAMFL GLLYTFSPFD FLRIGRQNVI DVFDYSAIAL SSVLYLVGLY LRRRRFRHVR
301: EMAEADFAAH

Best Arabidopsis Sequence Match ( AT4G33940.1 )
(BLAST)

001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL

Arabidopsis Description

At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.