CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011479.1-P	Field mustard	cytosol	93.12	97.46
CDX75389	Canola	cytosol	92.71	97.03
CDY49386	Canola	nucleus	68.83	73.91
CDX72441	Canola	cytosol, nucleus, peroxisome	67.21	73.78
AT4G33940.1	Thale cress	cytosol	67.61	63.74
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	38.87	42.48
Solyc01g103970.2.1	Tomato	cytosol	37.25	40.53
CDY25740	Canola	cytosol, nucleus, plasma membrane	27.94	36.9
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	27.53	36.76
CDY12526	Canola	cytosol, nucleus, plasma membrane	27.53	36.36
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.72	35.68
Solyc01g103980.2.1	Tomato	mitochondrion	44.94	35.58
CDX72875	Canola	cytosol, nucleus, plasma membrane	26.32	35.14
GSMUA_Achr8P08140_001	Banana	plasma membrane	25.91	34.78
PGSC0003DMT400061161	Potato	nucleus	43.32	34.52
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	25.91	34.41
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	25.1	33.7
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	24.7	31.12
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	24.7	30.96
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	24.7	30.96
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	23.08	29.84
HORVU3Hr1G111110.1	Barley	plastid	20.24	29.07
TraesCS3B01G567600.1	Wheat	mitochondrion	21.86	26.34
TraesCS3D01G511300.1	Wheat	mitochondrion	21.86	26.21

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078BYM6	EnsemblPlants:CDX69014	ProteinID:CDX69014	ProteinID:CDX69014.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0016740	GO:GO:0046872	GO:GO:0061630
EnsemblPlantsGene:GSBRNA2T00130769001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF00097	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR22894	PANTHER:PTHR22894:SF4	InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI0004EE2262	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

BnaC01g04390D

Coordinates

chrLK031789:+:2456843..2458334

Molecular Weight (calculated)

28039.0 Da

IEP (calculated)

7.103

GRAVY (calculated)

-0.164

Length

247 amino acids

Sequence
(BLAST)

001: MEVKTDEVNA AATETHGLSE PEEASNAVVL ADGAVTAAEE RKIERDNGGE RKKIQSETPP EDDCCPICFG SFTVPCRGDC GHWYCGSCIL QYWNYAAVSR
101: PCKCPMCVRH ITKLSPEASL QHRQEPEVKE VLVKIRRYNR LFVGGLTGFL QKVQELPLLM KRMVWHIMDP DTTNLHFNEV RIFAMLMSTL YTATEFNFIP
201: TGGFRIVTVF EFSAIAMILI LRLVGVYRRR RLTQRVRHVA AAELEPE

Best Arabidopsis Sequence Match ( AT4G33940.1 )
(BLAST)

001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL

Arabidopsis Description

At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.