CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, peroxisome

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05205
KXG22102
OQU81548

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33940.1	EES05205	AT5G09800.1	21798944
AT4G33940.1	KXG22102	AT5G09800.1	21798944
AT4G33940.1	OQU81548	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	85.34	83.16
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	85.34	82.74
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	85.34	82.74
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	64.4	66.49
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	61.78	63.44
Solyc11g027820.1.1	Tomato	cytosol	13.09	62.5
GSMUA_Achr8P08140_001	Banana	plasma membrane	58.12	60.33
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	56.54	58.7
VIT_18s0041g00290.t01	Wine grape	plasma membrane	51.31	52.69
PGSC0003DMT400068737	Potato	endoplasmic reticulum, nucleus, plasma membrane	49.74	51.35
AT1G72175.1	Thale cress	cytosol, nucleus, plasma membrane	49.21	50.81
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	48.69	50.27
Bra016082.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	48.69	50.27
CDY25740	Canola	cytosol, nucleus, plasma membrane	49.21	50.27
Bra012331.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	49.21	50.27
KRH64784	Soybean	nucleus	48.69	50.0
CDY12526	Canola	cytosol, nucleus, plasma membrane	48.69	49.73
CDX72875	Canola	cytosol, nucleus, plasma membrane	47.64	49.19
Solyc11g027810.1.1	Tomato	plasma membrane	38.22	45.62
AT1G22510.2	Thale cress	mitochondrion	40.84	38.42
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	30.89	26.11
Solyc01g103970.2.1	Tomato	cytosol	30.37	25.55
Bra017614.1-P	Field mustard	nucleus	29.84	24.36
CDY49386	Canola	nucleus	29.32	24.35
Bra011479.1-P	Field mustard	cytosol	29.84	24.15
CDX75389	Canola	cytosol	29.84	24.15
CDX72441	Canola	cytosol, nucleus, peroxisome	28.27	24.0
CDX69014	Canola	cytosol	29.84	23.08
AT4G33940.1	Thale cress	cytosol	28.8	20.99
Solyc01g103980.2.1	Tomato	mitochondrion	27.75	16.99
PGSC0003DMT400061161	Potato	nucleus	27.23	16.77

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:8079656	UniProt:C5WT38	InterPro:DUF1232	EnsemblPlants:EER90557
ProteinID:EER90557	ProteinID:EER90557.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF06803
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF5	InterPro:RNF170	SMART:SM00184
EnsemblPlantsGene:SORBI_3001G019900	SUPFAM:SSF57850	unigene:Sbi.13026	TMHMM:TMhelix	UniParc:UPI0001A825B9	RefSeq:XP_002463559.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:1658660..1661648

Molecular Weight (calculated)

21609.7 Da

IEP (calculated)

7.455

GRAVY (calculated)

0.302

Length

191 amino acids

Sequence
(BLAST)

001: MSSSSSASAV PPEDDVCSVC HDRFRIPCQA NCSHWFCGEC IIRVWHHGPA VHACKCPICR RLINLLVPAA LSEQEDDPQA HRILGEIQHY NCIFGGAPRS
101: LTQRLQDLPF FIRRLFRELM DPQRTLPLVF RARMMMMVAL SAIYVLSPVD ILPESMLGLL GFVDDLLILL IVFLHLAAVY RSLLLYRHGG Q

Best Arabidopsis Sequence Match ( AT1G72175.1 )
(BLAST)

001: MNSPPENDLC SICHSHFTAP CQANCSHWFC GNCIMLVWRH GSTLQPCKCP LCRRHISLLV PSEDTIRDRN DATVKEVLGN LETYNRLFGG RSSSLVQRMQ
101: DLPFLLRRLL REMMDPQRTL PLVIRARVYI AMILSAVYII SPIDIIPEGV LGVVGLLDDL LIALICFLHV AALYRSVLYF RHAGS

Arabidopsis Description

E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Source:UniProtKB/TrEMBL;Acc:Q93WJ5]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.