Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017614.1-P | Field mustard | nucleus | 97.83 | 96.15 |
| CDX72441 | Canola | cytosol, nucleus, peroxisome | 85.22 | 87.11 |
| CDX75389 | Canola | cytosol | 74.35 | 72.46 |
| CDX69014 | Canola | cytosol | 73.91 | 68.83 |
| AT4G33940.1 | Thale cress | cytosol | 73.04 | 64.12 |
| PGSC0003DMT400061164 | Potato | cytosol, nucleus, peroxisome | 40.0 | 40.71 |
| Solyc01g103970.2.1 | Tomato | cytosol | 40.0 | 40.53 |
| GSMUA_Achr7P23200_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 30.87 | 38.38 |
| CDX96380 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 30.43 | 37.84 |
| CDX72875 | Canola | cytosol, nucleus, plasma membrane | 30.0 | 37.3 |
| GSMUA_Achr6P18810_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 29.13 | 36.02 |
| GSMUA_Achr8P08140_001 | Banana | plasma membrane | 28.26 | 35.33 |
| CDY25740 | Canola | cytosol, nucleus, plasma membrane | 28.7 | 35.29 |
| CDY12526 | Canola | cytosol, nucleus, plasma membrane | 28.26 | 34.76 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 27.39 | 34.24 |
| Solyc01g103980.2.1 | Tomato | mitochondrion | 44.35 | 32.69 |
| PGSC0003DMT400061161 | Potato | nucleus | 43.91 | 32.58 |
| TraesCS4A01G352200.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 25.65 | 30.1 |
| TraesCS5B01G519400.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 25.65 | 29.95 |
| TraesCS5D01G518700.2 | Wheat | cytosol, nucleus, plasma membrane, plastid | 25.65 | 29.95 |
| EER90557 | Sorghum | endoplasmic reticulum, nucleus, peroxisome | 24.35 | 29.32 |
| HORVU3Hr1G111110.1 | Barley | plastid | 20.43 | 27.33 |
| TraesCS3B01G567600.1 | Wheat | mitochondrion | 22.61 | 25.37 |
| TraesCS3D01G511300.1 | Wheat | mitochondrion | 22.61 | 25.24 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078IHB7 | UniProt:A0A078IHB7 | EnsemblPlants:CDY49386 | ProteinID:CDY49386 |
| ProteinID:CDY49386.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | EnsemblPlantsGene:GSBRNA2T00092939001 |
| InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF00097 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR22894 |
| PANTHER:PTHR22894:SF4 | InterPro:RNF170 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0004EEDE89 |
| InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | : | : |
Description
BnaA03g50750DBnaA03g50750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHB7]
Coordinates
chrLK032828:+:117764..119201
Molecular Weight (calculated)
26420.0 Da
IEP (calculated)
5.415
GRAVY (calculated)
-0.154
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVTADEVSP EVNATAAEFL DQNEPAEEEQ MERDNGGERE TPPEDDCCPI CFSSFTVPCR GNCGHWYCGS CILQYWNYAA VSKPCKCPMC VRHITTLSPE
101: ASLQERQEQE VKEVLAKIRR YNRLFVGGLT GFLQKLKELP LLIKRMVWRM MDPDTNTLYF HEVRIFAMLM STLYTAAEFS FIPTGGFRIV TVFDYCAIAM
201: ILILRVVGIY RRRRLAQRVR HIAAAELEPE
101: ASLQERQEQE VKEVLAKIRR YNRLFVGGLT GFLQKLKELP LLIKRMVWRM MDPDTNTLYF HEVRIFAMLM STLYTAAEFS FIPTGGFRIV TVFDYCAIAM
201: ILILRVVGIY RRRRLAQRVR HIAAAELEPE
001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL
Arabidopsis Description
At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.