CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49386	Canola	nucleus	87.11	85.22
Bra017614.1-P	Field mustard	nucleus	86.22	82.91
CDX75389	Canola	cytosol	73.78	70.34
CDX69014	Canola	cytosol	73.78	67.21
AT4G33940.1	Thale cress	cytosol	73.33	62.98
PGSC0003DMT400061164	Potato	cytosol, nucleus, peroxisome	41.78	41.59
Solyc01g103970.2.1	Tomato	cytosol	40.44	40.09
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	31.11	37.84
CDX96380	Canola	cytosol, endoplasmic reticulum, plasma membrane	31.11	37.84
CDX72875	Canola	cytosol, nucleus, plasma membrane	30.67	37.3
CDY25740	Canola	cytosol, nucleus, plasma membrane	29.33	35.29
GSMUA_Achr8P08140_001	Banana	plasma membrane	28.44	34.78
CDY12526	Canola	cytosol, nucleus, plasma membrane	28.89	34.76
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	28.44	34.41
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	27.56	33.7
Solyc01g103980.2.1	Tomato	mitochondrion	45.78	33.01
PGSC0003DMT400061161	Potato	nucleus	45.33	32.9
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	25.33	29.08
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	25.33	28.93
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	25.33	28.93
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	24.0	28.27
HORVU3Hr1G111110.1	Barley	plastid	20.0	26.16
TraesCS3B01G567600.1	Wheat	mitochondrion	22.22	24.39
TraesCS3D01G511300.1	Wheat	mitochondrion	22.22	24.27

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078C5X4	EnsemblPlants:CDX72441	ProteinID:CDX72441	ProteinID:CDX72441.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0016740	GO:GO:0046872
GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00099947001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF00097	ScanProsite:PS00518
PFscan:PS50089	PANTHER:PTHR22894	PANTHER:PTHR22894:SF4	InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI0004EBC659	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

BnaC07g44630D

Coordinates

chrLK031796:+:1263173..1264544

Molecular Weight (calculated)

25826.6 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.039

Length

225 amino acids

Sequence
(BLAST)

001: MDVTTGEVLP VEAAANAVVT VEEEQIQRDN GRERETPPED DCCPICFSSF TVPCRGNCGH WYCGSCILQY WNYAAVSKPC KCPMCVRHIT TLLPEASLQE
101: RQEQEVKEVL AKIRRYNRLF VGGLTGFLQK FKELPLLIKR MVWRMMDPDT NSMYFHEVRI FAMLMSTLYT AAEFSFIPTG GFRIVTVFDY GAIAMILILR
201: VVGLYRRRRL AQRVRHIAAA ELEPE

Best Arabidopsis Sequence Match ( AT4G33940.1 )
(BLAST)

001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL

Arabidopsis Description

At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.