Factsheet for Solyc01g103980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g005700.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33940.1	Solyc11g005700.1.1	AT5G09800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061161	Potato	nucleus	81.73	82.26
Solyc11g027820.1.1	Tomato	cytosol	6.09	47.5
Bra011479.1-P	Field mustard	cytosol	35.58	47.03
CDX75389	Canola	cytosol	35.26	46.61
CDX72441	Canola	cytosol, nucleus, peroxisome	33.01	45.78
CDX69014	Canola	cytosol	35.58	44.94
CDY49386	Canola	nucleus	32.69	44.35
Bra017614.1-P	Field mustard	nucleus	32.69	43.59
AT4G33940.1	Thale cress	cytosol	34.29	40.84
Solyc01g103970.2.1	Tomato	cytosol	28.21	38.77
GSMUA_Achr7P23200_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	22.12	37.3
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	20.83	35.33
GSMUA_Achr6P18810_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	20.83	34.95
Solyc11g027810.1.1	Tomato	plasma membrane	17.63	34.38
GSMUA_Achr8P08140_001	Banana	plasma membrane	19.55	33.15
TraesCS4A01G352200.1	Wheat	cytosol, nucleus, plasma membrane, plastid	18.91	30.1
TraesCS5B01G519400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	18.91	29.95
TraesCS5D01G518700.2	Wheat	cytosol, nucleus, plasma membrane, plastid	18.91	29.95
EER90557	Sorghum	endoplasmic reticulum, nucleus, peroxisome	16.99	27.75
TraesCS3B01G567600.1	Wheat	mitochondrion	16.67	25.37
TraesCS3D01G511300.1	Wheat	mitochondrion	16.67	25.24
HORVU3Hr1G111110.1	Barley	plastid	12.82	23.26

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4B1X3	PFAM:PF00097	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR22894
PANTHER:PTHR22894:SF4	InterPro:RNF170	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g103980.2	EnsemblPlants:Solyc01g103980.2.1
TMHMM:TMhelix	UniParc:UPI00027685FC	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:92454960..92458612

Molecular Weight (calculated)

35265.9 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.327

Length

312 amino acids

Sequence
(BLAST)

001: MKFFLHSIPL RNRRQNPNPI PPSPAMLSDL ASDSGDGRQE ETASSSSAAV MNSDEEEEEE DMGYKSPDDE VSTTLFSGTE IEDELEGNRE PTAEDEDLRE
101: LDGASSKSLV VVETENAFLR TEKPPTDDCC PICFGNFVVP CRGPCGHWYC GGCILQYWNY GAALQPCNCP MCSRKLTDLT PEASLYSQQD AEVIEVLKKV
201: RKYNRLFIGG TYGLMLKVLG LPFYIKRVFN EMMNPDRPGA HLNKLRIFAM FLGLLYTFSP FDFLRIGRQN VIDVFDYSAI ALSSVLYLVG LYLRRRRFRH
301: VREMAEADFA AH

Best Arabidopsis Sequence Match ( AT4G33940.1 )
(BLAST)

001: MSSLGSSKSL RDEMEVTTAD VFPEVNAAAV TENLDRNELV LADGVVSAEE RNIEPDNRGE RKIESESPPE DDVCPICFGS FTVPCRGNCG HWYCGNCILQ
101: YWNYAAISRP CKCPMCVRHI TKLSPEPSLQ ERQEQEVKEV LDKVRRYNRL FVGGLTGFVQ KVHELPFLVK RMVWHMMDTD VNNLYFHEVR IFAMFMSTLY
201: TAAEFNFIPT GGFRIVTVFD YAAIAMILIL RLVGIYRRRR LAQQVRHLAA AAIEPELEQR EL

Arabidopsis Description

At4g33940 [Source:UniProtKB/TrEMBL;Acc:Q501G9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.