Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g103970.2.1 | |
| Solyc01g103980.2.1 | |
| Solyc11g044870.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09800.1 | Solyc01g103970.2.1 | AT4G33940.1 | 21798944 |
| AT5G09800.1 | Solyc01g103980.2.1 | AT4G33940.1 | 21798944 |
| AT5G09800.1 | Solyc11g044870.1.1 | AT4G33945.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400065698 | Potato | cytosol | 96.43 | 96.43 |
| KRH59546 | Soybean | cytosol | 51.43 | 51.67 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 50.48 | 51.46 |
| KRH43397 | Soybean | cytosol | 49.76 | 50.0 |
| GSMUA_Achr8P30420_001 | Banana | mitochondrion | 30.95 | 47.62 |
| CDY08864 | Canola | cytosol | 47.38 | 47.49 |
| Bra024318.1-P | Field mustard | cytosol | 47.14 | 47.26 |
| CDX84538 | Canola | cytosol | 47.14 | 47.26 |
| AT5G09800.1 | Thale cress | cytosol | 45.71 | 46.94 |
| AT5G64660.1 | Thale cress | cytosol | 46.67 | 46.67 |
| KRH53869 | Soybean | cytosol | 46.19 | 46.52 |
| AT3G18710.1 | Thale cress | cytosol | 42.86 | 43.37 |
| CDX75980 | Canola | cytosol | 42.62 | 42.22 |
| CDX82332 | Canola | cytosol | 42.62 | 42.22 |
| CDX92262 | Canola | cytosol | 41.43 | 42.13 |
| Bra001717.1-P | Field mustard | cytosol | 42.38 | 41.98 |
| KRH36899 | Soybean | cytosol | 36.9 | 41.78 |
| CDX99325 | Canola | cytosol | 41.9 | 41.61 |
| Bra037568.1-P | Field mustard | cytosol | 40.48 | 41.16 |
| Bra022347.1-P | Field mustard | cytosol | 41.43 | 41.04 |
| CDY71041 | Canola | cytosol | 40.24 | 40.92 |
| Solyc04g071030.1.1 | Tomato | cytosol | 40.0 | 39.34 |
| GSMUA_Achr5P01020_001 | Banana | cytosol | 33.33 | 34.91 |
| Zm00001d050689_P001 | Maize | cytosol | 35.24 | 34.5 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 36.19 | 34.47 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 36.19 | 34.47 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 36.19 | 34.47 |
| Zm00001d016719_P001 | Maize | cytosol | 35.0 | 34.27 |
| GSMUA_Achr6P18140_001 | Banana | cytosol | 33.1 | 33.99 |
| GSMUA_Achr10P... | Banana | plastid | 30.95 | 33.85 |
| Zm00001d025379_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 35.48 | 33.56 |
| OQU81548 | Sorghum | mitochondrion | 35.71 | 33.56 |
| EES05205 | Sorghum | cytosol | 35.71 | 33.11 |
| Os04t0418500-01 | Rice | plastid | 35.0 | 32.59 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 12.86 | 30.17 |
| Os02t0540700-00 | Rice | plastid | 35.71 | 29.7 |
| HORVU2Hr1G074130.1 | Barley | plastid | 36.19 | 29.34 |
| Solyc05g056500.1.1 | Tomato | cytosol | 27.38 | 28.68 |
| Os05t0439400-01 | Rice | plasma membrane | 28.57 | 26.55 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 28.33 | 26.27 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 28.1 | 26.05 |
| Zm00001d038280_P001 | Maize | cytosol | 27.86 | 25.89 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 27.86 | 25.83 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 27.86 | 25.83 |
| KXG22102 | Sorghum | mitochondrion | 27.86 | 25.6 |
| Solyc01g107980.2.1 | Tomato | cytosol | 25.0 | 25.3 |
| Solyc01g007010.2.1 | Tomato | cytosol | 24.52 | 25.25 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 24.52 | 25.18 |
| Solyc04g077610.2.1 | Tomato | cytosol | 25.0 | 25.06 |
| Solyc01g007020.2.1 | Tomato | cytosol | 24.05 | 24.75 |
| Solyc04g008100.1.1 | Tomato | cytosol | 25.95 | 24.66 |
| Solyc11g068920.1.1 | Tomato | cytosol | 23.57 | 24.5 |
| Solyc01g007030.2.1 | Tomato | cytosol | 12.14 | 24.17 |
| Solyc01g009330.1.1 | Tomato | cytosol | 24.29 | 23.94 |
| Solyc01g005160.2.1 | Tomato | mitochondrion | 24.76 | 23.11 |
| Solyc06g074140.1.1 | Tomato | cytosol | 21.9 | 21.9 |
| Solyc11g006030.1.1 | Tomato | cytosol | 22.38 | 21.86 |
| Solyc01g080920.2.1 | Tomato | cytosol | 20.95 | 21.52 |
| Solyc01g007050.1.1 | Tomato | cytosol | 21.43 | 21.38 |
| Solyc01g009320.1.1 | Tomato | cytosol | 20.71 | 20.81 |
| Solyc11g068940.1.1 | Tomato | cytosol | 20.71 | 20.57 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | UniProt:K4D4I3 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF20 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc11g005700.1 | EnsemblPlants:Solyc11g005700.1.1 | UniParc:UPI0002769909 |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4D4I3]
Coordinates
chr11:+:547491..548753
Molecular Weight (calculated)
46792.8 Da
IEP (calculated)
8.606
GRAVY (calculated)
-0.033
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKDDLYVTV PSFFRCPISL DVMKSPVSLC TGVTYDRSSI QRWLDSGNNT CPATMQVLQT KDLVPNYTLQ RLIQIWSESV RAQRSDTESN RVNSVSHDQV
101: RELIKQFVNE FRVHSELEVN SDRLSKLLGF SEESAENLRF VASVAAESDF LAILTSFLVH NPKNLKVVEK IVPLWKMLLV ERGSLSKIGK ANDIYPAIIF
201: ALRNGSSKLK MEMSKALEFI TSTDSEAKSS LSENSDLYSV LLSFSTINTD WNPDLMEVSV SCLISLAMLR KNRVKLVKAG AVKSVGKALS TTEMGTGLTD
301: KVLRLLELIS TCKEGRLELC NDGDCVQAIV KKVLKVSNEA TEHAVTILWS LCCLFRDHRA QESVAKSNGM AKILLLLQSN CSPAVRQMAA DLLKVFRVNS
401: KAVSCLSTSY DTKTTHIMPF
101: RELIKQFVNE FRVHSELEVN SDRLSKLLGF SEESAENLRF VASVAAESDF LAILTSFLVH NPKNLKVVEK IVPLWKMLLV ERGSLSKIGK ANDIYPAIIF
201: ALRNGSSKLK MEMSKALEFI TSTDSEAKSS LSENSDLYSV LLSFSTINTD WNPDLMEVSV SCLISLAMLR KNRVKLVKAG AVKSVGKALS TTEMGTGLTD
301: KVLRLLELIS TCKEGRLELC NDGDCVQAIV KKVLKVSNEA TEHAVTILWS LCCLFRDHRA QESVAKSNGM AKILLLLQSN CSPAVRQMAA DLLKVFRVNS
401: KAVSCLSTSY DTKTTHIMPF
001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF
Arabidopsis Description
PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.