Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037568.1-P | Field mustard | cytosol | 97.58 | 97.58 |
| CDX92262 | Canola | cytosol | 77.97 | 77.97 |
| CDX82332 | Canola | cytosol | 79.18 | 77.12 |
| AT3G18710.1 | Thale cress | cytosol | 77.24 | 76.87 |
| CDX99325 | Canola | cytosol | 78.69 | 76.83 |
| CDX75980 | Canola | cytosol | 77.97 | 75.94 |
| CDX84538 | Canola | cytosol | 54.0 | 53.22 |
| CDY08864 | Canola | cytosol | 53.75 | 52.98 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 48.43 | 48.54 |
| KRH53869 | Soybean | cytosol | 46.49 | 46.04 |
| KRH43397 | Soybean | cytosol | 46.49 | 45.93 |
| KRH59546 | Soybean | cytosol | 46.25 | 45.69 |
| GSMUA_Achr8P30420_001 | Banana | mitochondrion | 28.57 | 43.22 |
| KRH36899 | Soybean | cytosol | 37.05 | 41.24 |
| PGSC0003DMT400065698 | Potato | cytosol | 41.16 | 40.48 |
| Solyc11g005700.1.1 | Tomato | cytosol | 40.92 | 40.24 |
| GSMUA_Achr10P... | Banana | plastid | 32.2 | 34.64 |
| GSMUA_Achr5P01020_001 | Banana | cytosol | 32.2 | 33.17 |
| GSMUA_Achr6P18140_001 | Banana | cytosol | 31.96 | 32.27 |
| OQU81548 | Sorghum | mitochondrion | 32.69 | 30.2 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 32.2 | 30.16 |
| Zm00001d016719_P001 | Maize | cytosol | 31.23 | 30.07 |
| Zm00001d025379_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 31.96 | 29.73 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 31.72 | 29.71 |
| Os04t0418500-01 | Rice | plastid | 32.2 | 29.49 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 31.48 | 29.48 |
| Zm00001d050689_P001 | Maize | cytosol | 29.78 | 28.67 |
| EES05205 | Sorghum | cytosol | 31.23 | 28.48 |
| Os02t0540700-00 | Rice | plastid | 32.69 | 26.73 |
| Os05t0439400-01 | Rice | plasma membrane | 28.33 | 25.89 |
| KXG22102 | Sorghum | mitochondrion | 28.57 | 25.82 |
| HORVU2Hr1G074130.1 | Barley | plastid | 32.2 | 25.68 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 27.84 | 25.39 |
| CDY23218 | Canola | cytosol | 24.21 | 25.25 |
| Zm00001d038280_P001 | Maize | cytosol | 27.6 | 25.22 |
| CDX84587 | Canola | cytosol | 24.94 | 25.18 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 27.6 | 25.17 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 27.36 | 24.94 |
| CDX95337 | Canola | cytosol | 24.7 | 24.94 |
| CDX78096 | Canola | cytosol | 23.49 | 24.94 |
| CDX79645 | Canola | cytosol | 24.46 | 24.75 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 26.88 | 24.5 |
| CDY59599 | Canola | cytosol | 24.21 | 24.45 |
| CDX75084 | Canola | cytosol | 23.97 | 24.38 |
| CDY40422 | Canola | cytosol | 24.21 | 24.27 |
| CDY32070 | Canola | cytosol | 23.97 | 24.03 |
| CDX84168 | Canola | cytosol | 23.49 | 23.89 |
| CDY50158 | Canola | cytosol | 23.73 | 23.5 |
| CDX95458 | Canola | cytosol | 23.73 | 23.5 |
| CDX92328 | Canola | cytosol | 23.73 | 23.17 |
| CDY27655 | Canola | mitochondrion | 24.21 | 22.83 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 23.24 | 22.8 |
| CDX99694 | Canola | mitochondrion | 23.73 | 22.37 |
| CDY18670 | Canola | cytosol | 23.97 | 22.35 |
| CDY69247 | Canola | cytosol | 23.97 | 22.35 |
| CDX83098 | Canola | cytosol | 23.49 | 21.9 |
| CDY16513 | Canola | cytosol | 22.28 | 21.75 |
| CDY59286 | Canola | cytosol | 22.28 | 21.75 |
| CDY53920 | Canola | cytosol | 22.52 | 21.33 |
| CDY53333 | Canola | cytosol | 23.0 | 21.25 |
| CDY47911 | Canola | cytosol | 21.31 | 20.85 |
| CDY50319 | Canola | cytosol | 21.55 | 20.84 |
| CDY16432 | Canola | cytosol | 21.31 | 20.56 |
| CDY67531 | Canola | cytosol | 22.03 | 20.36 |
| CDX73849 | Canola | cytosol | 22.03 | 19.49 |
| CDY51529 | Canola | mitochondrion | 17.68 | 19.47 |
| CDY01063 | Canola | cytosol | 20.1 | 18.86 |
| CDY08490 | Canola | cytosol | 20.1 | 18.78 |
| CDX92016 | Canola | mitochondrion | 16.46 | 18.48 |
| CDY28714 | Canola | mitochondrion | 16.71 | 18.4 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 15.98 | 17.93 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078JZM7 | UniProt:A0A078JZM7 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY71041 | ProteinID:CDY71041 | ProteinID:CDY71041.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00010757001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF20 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE8C47 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng35870DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078JZM7]
Coordinates
chrLK044246:-:1130..2371
Molecular Weight (calculated)
45976.1 Da
IEP (calculated)
8.128
GRAVY (calculated)
-0.069
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTETYITVP SFFKCPISLD VMRSPVSLCT GVTYDRASIQ RWLDGGNNTC PATMQVLRTK EFIPNLTLQR LIKAWSDSLG RYAAASPPPD PTTDEVNESL
101: RRLSLEKDDE IRLEILVRFV KDWDANRARK DLVPMLVDII AGGTRTTTKI KLVLLAIKIL DSVIKGGSEE DRKRLSNLML TNGDGDCLKE ILLAIQRGNL
201: ESKIESVRVL EVISSIDTQT KLLIAERDEI LTEVMESIST ESDPSLIEAS LSFLITIAKS KRVRSKLITA KTITKIKDIL LTEEITSVAV TEKSLKLLET
301: LSSRREGRSE ICGRDGGRCV EGVVRKLLKV STTATEHAVT ILWCLCYVFG EDKRVEETVE RSNGVTKLLV VIQSNCSPMV RQMAKDVIKV LKVKPSASDL
401: VAYETTNTHI MPF
101: RRLSLEKDDE IRLEILVRFV KDWDANRARK DLVPMLVDII AGGTRTTTKI KLVLLAIKIL DSVIKGGSEE DRKRLSNLML TNGDGDCLKE ILLAIQRGNL
201: ESKIESVRVL EVISSIDTQT KLLIAERDEI LTEVMESIST ESDPSLIEAS LSFLITIAKS KRVRSKLITA KTITKIKDIL LTEEITSVAV TEKSLKLLET
301: LSSRREGRSE ICGRDGGRCV EGVVRKLLKV STTATEHAVT ILWCLCYVFG EDKRVEETVE RSNGVTKLLV VIQSNCSPMV RQMAKDVIKV LKVKPSASDL
401: VAYETTNTHI MPF
001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF
Arabidopsis Description
PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.