CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18670	Canola	cytosol	97.74	97.74
AT5G65920.1	Thale cress	cytosol	84.42	84.23
CDX83098	Canola	cytosol	77.2	77.2
CDY53333	Canola	cytosol	77.2	76.51
VIT_00s0471g00010.t01	Wine grape	cytosol	70.65	70.02
Zm00001d019807_P001	Maize	extracellular	14.22	67.02
KRH77156	Soybean	cytosol	67.27	66.37
KRH58142	Soybean	cytosol	65.91	65.77
GSMUA_Achr8P04940_001	Banana	cytosol	64.11	65.74
GSMUA_Achr2P08620_001	Banana	cytosol	63.43	64.75
GSMUA_Achr3P25750_001	Banana	cytosol	61.4	63.4
KRH28330	Soybean	plastid	67.04	57.78
GSMUA_Achr4P07400_001	Banana	cytosol	56.43	57.6
EER95229	Sorghum	cytosol	59.59	57.52
Zm00001d028294_P001	Maize	cytosol	59.37	57.3
Zm00001d048008_P001	Maize	cytosol	59.37	56.8
Os03t0232600-01	Rice	cytosol	58.69	56.64
HORVU4Hr1G066070.1	Barley	cytosol	58.24	56.09
TraesCS4D01G237600.1	Wheat	cytosol	58.01	55.99
TraesCS4B01G236200.1	Wheat	cytosol	58.01	55.99
TraesCS4A01G060800.1	Wheat	cytosol	57.79	55.77
Zm00001d000044_P001	Maize	cytosol	21.67	41.56
CDY50158	Canola	cytosol	25.28	26.86
CDX95458	Canola	cytosol	24.83	26.38
CDX99233	Canola	cytosol, peroxisome, plastid	24.83	26.13
CDX92328	Canola	cytosol	24.83	26.0
CDY08864	Canola	cytosol	24.38	25.78
CDX84538	Canola	cytosol	24.38	25.78
CDX78096	Canola	cytosol	21.9	24.94
CDY59286	Canola	cytosol	23.7	24.82
CDY16513	Canola	cytosol	23.48	24.59
CDX75980	Canola	cytosol	23.25	24.29
CDX95337	Canola	cytosol	22.35	24.21
CDX84587	Canola	cytosol	22.35	24.21
CDY59599	Canola	cytosol	22.35	24.21
CDX82332	Canola	cytosol	23.02	24.06
CDY32070	Canola	cytosol	22.35	24.03
CDY40422	Canola	cytosol	22.35	24.03
CDY23218	Canola	cytosol	21.44	23.99
CDY71041	Canola	cytosol	22.35	23.97
CDX84168	Canola	cytosol	21.9	23.89
CDX79645	Canola	cytosol	21.67	23.53
CDY50319	Canola	cytosol	22.57	23.42
CDX75084	Canola	cytosol	21.44	23.4
CDX92262	Canola	cytosol	21.67	23.24
CDY16432	Canola	cytosol	22.35	23.13
CDX99325	Canola	cytosol	21.9	22.93
CDY01063	Canola	cytosol	20.99	21.14
CDY51529	Canola	mitochondrion	17.61	20.8
CDY28714	Canola	mitochondrion	17.61	20.8
CDY27655	Canola	mitochondrion	20.54	20.78
CDY53920	Canola	cytosol	20.32	20.64
CDY08490	Canola	cytosol	20.54	20.59
CDX99694	Canola	mitochondrion	20.32	20.55
CDX92016	Canola	mitochondrion	16.93	20.38
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	16.93	20.38
CDY47911	Canola	cytosol	19.19	20.14
CDY67531	Canola	cytosol	20.32	20.13
CDX73849	Canola	cytosol	20.54	19.49

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078JUR0	UniProt:A0A078JUR0	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY69247	ProteinID:CDY69247	ProteinID:CDY69247.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00084269001	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF105
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE1253	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaCnng62640DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078JUR0]

Coordinates

chrLK038948:-:306..1755

Molecular Weight (calculated)

48199.3 Da

IEP (calculated)

7.445

GRAVY (calculated)

0.168

Length

443 amino acids

Sequence
(BLAST)

001: MPMFQPFKGG GFDGHVIDLH TAVKDGVLGG GDGGEVKTAA VENELDLKTM ITNLELPETP SVFICPISLE PMQDPVTLCT GQTYERSNIL KWLSLGHRTC
101: PTTMQELWDD AVTPNKTLHQ LIHAWFSQKY VMMKKRSEDV QGRVIEIVGA LRKAKGKEKV HALSELKGVV MAHEIAKKSV VDEGGVFVIS SLLTPFTSHA
201: VGSEAVAILV NLELDAVSKA GLMQPARVSL MVDMLNDGSI ETKINCARLI GRLVEERGFR AELVSSHSLL VGLMRLVKDR RRRSGVSPAL ALLKSISVHK
301: QVRSLMVSVE AVPQLVDVLP CLGPECLESA LYVLDSLCSD NEGVTALKDS VNTIPNTVRL LMRVSETCTA YAVSILWSVC RIASRECSSL AVELGLAAKL
401: LLVIQSGCDP ALKQRSAELL KLCSLHYSDT MFISKCKLAP TIQ

Best Arabidopsis Sequence Match ( AT5G65920.2 )
(BLAST)

001: MPMFQPSKNG GFDGHILDLH SAVKDGVLGG GDGKFLVVVT DEKKKLDLKE MISELELPEI PSVFICPISL EPMQDPVTLC TGQTYERSNI LKWFNIGHCT
101: CPTTMQELWD DLVTPNKTLH QLIYTWFSQK YVLMKKRSED VQGRAIEILG TLRKAKGKAK VHALSELKQV VMAHAIAKKT VVDEGGVFVI SSLLSPFTSH
201: AVGSEAIAIL VNLELDSDSK AGLMQPARVS LMVDMLNDGS IETKINCARL IGRLVEEKGF RAELVSSHSL LVGLMRLVKD RRRRNGVSPA LTLLKSVSVH
301: KQVRNLLVRI GAVPQLVDVL PCLDVECLES ALFVLDSLCL ESEGRIALKD SVNTIPHTVR LLMKVSEKCT NYAISILWSV CKLASEECSS LAVEVGLAAK
401: LLLVIQSGCD PALKQRSAEL LKLCSLHYSD SMFISKCKLT RTIQ

Arabidopsis Description

PUB31U-box domain-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.