CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27655	Canola	mitochondrion	98.17	98.17
Bra025442.1-P	Field mustard	mitochondrion	97.49	97.49
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	78.08	78.62
CDY16432	Canola	cytosol	58.45	59.81
CDY50319	Canola	cytosol	57.31	58.78
KRH72959	Soybean	cytosol, mitochondrion	45.66	45.66
KRG97963	Soybean	mitochondrion	44.52	45.24
KRH17309	Soybean	cytosol, mitochondrion	45.21	45.1
KRH30918	Soybean	mitochondrion	44.75	45.06
PGSC0003DMT400073836	Potato	cytosol	42.69	44.63
Solyc11g006030.1.1	Tomato	cytosol	42.92	43.72
GSMUA_Achr10P...	Banana	cytosol	34.02	39.63
GSMUA_Achr6P11310_001	Banana	cytosol	33.79	38.95
GSMUA_Achr11P...	Banana	mitochondrion	37.67	38.82
GSMUA_Achr6P02470_001	Banana	mitochondrion	33.1	38.16
GSMUA_Achr7P18640_001	Banana	mitochondrion	32.19	37.2
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	30.82	36.68
CDX92016	Canola	mitochondrion	30.59	36.41
Zm00001d017976_P001	Maize	mitochondrion	37.44	36.28
TraesCS7D01G201600.1	Wheat	mitochondrion	35.62	35.29
Os06t0248500-00	Rice	mitochondrion	36.3	35.1
TraesCS7B01G105600.1	Wheat	mitochondrion	35.62	34.98
Zm00001d044734_P001	Maize	mitochondrion	35.16	34.84
CDY51529	Canola	mitochondrion	29.68	34.67
TraesCS4B01G228700.1	Wheat	mitochondrion	34.47	34.32
KXG19704	Sorghum	mitochondrion	35.84	34.2
CDY28714	Canola	mitochondrion	29.22	34.13
GSMUA_Achr3P02030_001	Banana	plastid	32.65	34.13
Zm00001d028374_P001	Maize	mitochondrion	34.7	34.0
EES05563	Sorghum	mitochondrion	35.84	33.98
EER92576	Sorghum	mitochondrion	35.16	33.92
HORVU4Hr1G064070.1	Barley	mitochondrion	33.79	33.64
TraesCS4D01G229900.1	Wheat	mitochondrion	33.79	33.64
Os03t0240600-01	Rice	plastid	33.79	33.26
TraesCS6A01G312600.1	Wheat	mitochondrion	34.47	33.19
Zm00001d030251_P001	Maize	cytosol	33.33	32.88
TraesCS6B01G342800.1	Wheat	mitochondrion	33.79	32.6
Os02t0738200-01	Rice	mitochondrion	33.79	32.46
HORVU7Hr1G040790.2	Barley	plastid	35.84	32.17
TraesCS6D01G292200.1	Wheat	mitochondrion	33.33	32.16
CDX78096	Canola	cytosol	28.08	31.62
CDY59599	Canola	cytosol	29.0	31.05
TraesCS5A01G088600.1	Wheat	cytosol	23.97	30.7
CDY16513	Canola	cytosol	29.45	30.5
CDX79645	Canola	cytosol	28.31	30.39
CDY59286	Canola	cytosol	29.22	30.26
CDX95337	Canola	cytosol	28.08	30.07
CDX84587	Canola	cytosol	28.08	30.07
CDY23218	Canola	cytosol	27.17	30.05
CDY40422	Canola	cytosol	28.08	29.85
CDY32070	Canola	cytosol	28.08	29.85
CDX75084	Canola	cytosol	27.63	29.8
CDX84168	Canola	cytosol	27.63	29.8
CDX99233	Canola	cytosol, peroxisome, plastid	28.54	29.69
HORVU6Hr1G077120.1	Barley	plastid	34.25	29.3
CDX92328	Canola	cytosol	28.08	29.08
CDX95458	Canola	cytosol	27.63	29.02
KXG38738	Sorghum	plastid	32.65	28.95
CDY50158	Canola	cytosol	27.4	28.78
CDX92262	Canola	cytosol	24.2	25.67
CDY47911	Canola	cytosol	24.2	25.12
CDY08864	Canola	cytosol	23.97	25.06
CDY53920	Canola	cytosol	24.89	25.0
CDX84538	Canola	cytosol	23.74	24.82
CDX99325	Canola	cytosol	23.74	24.59
CDX75980	Canola	cytosol	23.52	24.29
CDX73849	Canola	cytosol	25.57	23.98
CDY71041	Canola	cytosol	22.37	23.73
CDX82332	Canola	cytosol	22.83	23.58
CDY01063	Canola	cytosol	23.52	23.41
CDY08490	Canola	cytosol	23.29	23.08
CDY67531	Canola	cytosol	23.52	23.04
CDY53333	Canola	cytosol	21.69	21.25
CDX83098	Canola	cytosol	21.46	21.22
CDY18670	Canola	cytosol	20.78	20.54
CDY69247	Canola	cytosol	20.55	20.32

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078EFW8	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDX99694	ProteinID:CDX99694	ProteinID:CDX99694.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00108260001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF61	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE7AB0	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC04g34510D

Coordinates

chrLK031912:-:1204052..1205368

Molecular Weight (calculated)

48836.4 Da

IEP (calculated)

5.180

GRAVY (calculated)

-0.041

Length

438 amino acids

Sequence
(BLAST)

001: MGFTWGMRLR GASKKKIAPV MSWSESTSEP DITIPPEFQC PISIDLMKDP VIISTGITYD RTSIEKWIDS GNNTCPVTNT VLTTFDQIPN HTIRKMIQGW
101: CVEIGSSLIE RIPTPRVPLM PCEVYEICRK LSSATRRGDY EKCEEIIWRI KKLEKESEKN RNCIIENGVA LVLCDCFEKF SADEKSTSIL GKILSLLTWM
201: VPIGWEGLTT LASASSFRCI AGFLRSKDDT VRENAAFLLK EILSLEETQV HAFAEENGVA AAFLKLIRDS VSSSSTRSSL TAVSQMVLAK PEIASEFLEI
301: GLVNQTVEMI IDGENSVCEK ALAVLDAVCE TSEGIEEVRK NALVMPLLVK KILKVSEQGT WSSVSAILKL CKAGNASTVE EAVRLGAFQK MFLVLQVRYG
401: EETKEKATEL LKMMNTQMKL MSDDVDSSME FKYLKKPF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.