Factsheet for TraesCS5A01G088600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G201600.1	Wheat	mitochondrion	64.04	49.55
TraesCS7B01G105600.1	Wheat	mitochondrion	64.04	49.1
HORVU7Hr1G040790.2	Barley	plastid	65.5	45.9
Zm00001d044734_P001	Maize	mitochondrion	56.43	43.67
Os06t0248500-00	Rice	mitochondrion	57.31	43.27
KXG19704	Sorghum	mitochondrion	57.31	42.7
TraesCS6A01G312600.1	Wheat	mitochondrion	47.37	35.6
GSMUA_Achr6P02470_001	Banana	mitochondrion	35.09	31.58
GSMUA_Achr6P11310_001	Banana	cytosol	34.8	31.32
GSMUA_Achr10P...	Banana	cytosol	32.46	29.52
GSMUA_Achr7P18640_001	Banana	mitochondrion	32.16	29.02
GSMUA_Achr3P02030_001	Banana	plastid	35.09	28.64
VIT_01s0011g06140.t01	Wine grape	mitochondrion	36.84	28.51
GSMUA_Achr11P...	Banana	mitochondrion	35.38	28.47
KRH48691	Soybean	cytosol	34.8	27.23
KRH39018	Soybean	mitochondrion	34.21	26.71
KRH72959	Soybean	cytosol, mitochondrion	33.92	26.48
KRH17309	Soybean	cytosol, mitochondrion	33.92	26.42
KRG97963	Soybean	mitochondrion	32.75	25.99
KRH30918	Soybean	mitochondrion	33.04	25.98
Solyc01g005160.2.1	Tomato	mitochondrion	33.63	25.56
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	33.63	25.5
PGSC0003DMT400075778	Potato	mitochondrion	32.16	24.89
Solyc04g008100.1.1	Tomato	cytosol	31.87	24.66
PGSC0003DMT400073836	Potato	cytosol	30.12	24.58
Solyc11g006030.1.1	Tomato	cytosol	30.7	24.42
Bra025442.1-P	Field mustard	mitochondrion	30.7	23.97
CDX99694	Canola	mitochondrion	30.7	23.97
CDY27655	Canola	mitochondrion	30.41	23.74
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	30.12	23.68
Bra039752.1-P	Field mustard	cytosol	28.36	22.99
CDY16432	Canola	cytosol	28.66	22.9
CDY50319	Canola	cytosol	27.78	22.25
AT1G66160.1	Thale cress	cytosol	27.49	21.81
TraesCS2A01G307000.1	Wheat	cytosol	23.68	20.93
TraesCS6A01G382300.1	Wheat	cytosol	24.56	19.91
TraesCS3A01G376900.1	Wheat	cytosol	24.27	19.86
TraesCS6A01G382800.1	Wheat	cytosol	24.27	19.67
TraesCS6A01G256700.1	Wheat	extracellular	22.81	19.16
CDX92016	Canola	mitochondrion	19.88	18.48
TraesCS2A01G298000.1	Wheat	cytosol	23.1	18.33
Bra040605.1-P	Field mustard	mitochondrion	19.88	18.13
CDY51529	Canola	mitochondrion	19.88	18.13
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	20.18	18.02
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	19.3	17.93
Bra001067.1-P	Field mustard	mitochondrion	19.3	17.93
CDY28714	Canola	mitochondrion	19.59	17.87
AT3G02840.1	Thale cress	mitochondrion	19.59	17.68
TraesCS6A01G176800.1	Wheat	cytosol	21.93	17.36
TraesCS6A01G263700.1	Wheat	cytosol	21.34	16.98
TraesCS4A01G060800.1	Wheat	cytosol	22.51	16.78
TraesCS2A01G450300.1	Wheat	cytosol	20.18	16.55
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	20.18	15.65
TraesCS1A01G274800.1	Wheat	mitochondrion	19.59	14.79

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF16
SMART:SM00504	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS5A01G088600	EnsemblPlants:TraesCS5A01G088600.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:119027611..119029472

Molecular Weight (calculated)

36657.3 Da

IEP (calculated)

10.104

GRAVY (calculated)

-0.127

Length

342 amino acids

Sequence
(BLAST)

001: MPAHFRCPIS LELMKDPVKA PTGINNGRER WLVRGRDTCP ITGGPVWLAD LVPNNATRHM IQDWCVANRA EQVPVAEADA AEVLAAFVRG NAAACGQGAA
101: RAIGKESDRN RRCLVAAGAA RQLASAFRSL TGEPVESTSA AALSALGTIL AALTMFFPLD DEARRCIASQ ASHKSQDPCL GALAQPPRPR SSRPTTPSPA
201: ATACFADVVV ELVVDTDKGT SEKALAVLDG VLCADTGLRS ACAYALVMPV LVKKMFRVSN MAKEFARLRA LAPLLCRGHR RWRALLRGTA CGLLPEAAPS
301: VLRRHDRGSG QRAAQAAQWF QGQRRVHRDD GLQGAQEVKR PF

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.