Factsheet for Bra025442.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27655	Canola	mitochondrion	98.86	98.86
CDX99694	Canola	mitochondrion	97.49	97.49
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	77.63	78.16
Bra039752.1-P	Field mustard	cytosol	58.45	60.66
KRG97963	Soybean	mitochondrion	44.98	45.71
KRH72959	Soybean	cytosol, mitochondrion	45.66	45.66
KRH17309	Soybean	cytosol, mitochondrion	45.43	45.33
KRH30918	Soybean	mitochondrion	44.75	45.06
PGSC0003DMT400073836	Potato	cytosol	42.92	44.87
Solyc11g006030.1.1	Tomato	cytosol	42.92	43.72
GSMUA_Achr10P...	Banana	cytosol	34.25	39.89
GSMUA_Achr6P11310_001	Banana	cytosol	34.25	39.47
GSMUA_Achr11P...	Banana	mitochondrion	37.9	39.06
GSMUA_Achr6P02470_001	Banana	mitochondrion	33.56	38.68
GSMUA_Achr7P18640_001	Banana	mitochondrion	32.42	37.47
Zm00001d017976_P001	Maize	mitochondrion	38.13	36.95
Bra001067.1-P	Field mustard	mitochondrion	30.14	35.87
TraesCS7D01G201600.1	Wheat	mitochondrion	36.07	35.75
Os06t0248500-00	Rice	mitochondrion	36.76	35.54
Zm00001d044734_P001	Maize	mitochondrion	35.84	35.52
TraesCS7B01G105600.1	Wheat	mitochondrion	36.07	35.43
TraesCS4B01G228700.1	Wheat	mitochondrion	34.93	34.77
Zm00001d028374_P001	Maize	mitochondrion	35.39	34.68
Bra040605.1-P	Field mustard	mitochondrion	29.68	34.67
KXG19704	Sorghum	mitochondrion	36.3	34.64
EES05563	Sorghum	mitochondrion	36.53	34.63
GSMUA_Achr3P02030_001	Banana	plastid	33.1	34.61
EER92576	Sorghum	mitochondrion	35.84	34.58
HORVU4Hr1G064070.1	Barley	mitochondrion	34.25	34.09
TraesCS4D01G229900.1	Wheat	mitochondrion	34.25	34.09
Os03t0240600-01	Rice	plastid	34.47	33.93
TraesCS6A01G312600.1	Wheat	mitochondrion	35.16	33.85
TraesCS6B01G342800.1	Wheat	mitochondrion	34.47	33.26
Os02t0738200-01	Rice	mitochondrion	34.47	33.11
Zm00001d030251_P001	Maize	cytosol	33.56	33.11
TraesCS6D01G292200.1	Wheat	mitochondrion	34.02	32.82
HORVU7Hr1G040790.2	Barley	plastid	36.3	32.58
Bra014206.1-P	Field mustard	cytosol	29.91	30.97
Bra023044.1-P	Field mustard	cytosol	28.77	30.81
Bra012803.1-P	Field mustard	cytosol	29.68	30.73
TraesCS5A01G088600.1	Wheat	cytosol	23.97	30.7
Bra017278.1-P	Field mustard	cytosol	28.77	30.58
Bra006925.1-P	Field mustard	cytosol	29.68	29.89
HORVU6Hr1G077120.1	Barley	plastid	34.93	29.88
Bra038205.1-P	Field mustard	cytosol	28.08	29.5
Bra005309.1-P	Field mustard	cytosol	26.03	29.46
Bra022415.1-P	Field mustard	cytosol	28.31	29.38
Bra022417.1-P	Field mustard	cytosol	28.31	29.38
KXG38738	Sorghum	plastid	32.88	29.15
Bra033430.1-P	Field mustard	cytosol	28.08	29.01
Bra022347.1-P	Field mustard	cytosol	24.89	25.71
Bra037568.1-P	Field mustard	cytosol	23.29	24.7
Bra024318.1-P	Field mustard	cytosol	23.52	24.58
Bra038683.1-P	Field mustard	cytosol	24.43	23.94
Bra001424.1-P	Field mustard	cytosol	25.57	23.93
Bra001717.1-P	Field mustard	cytosol	22.37	23.11
Bra034806.1-P	Field mustard	cytosol	23.52	22.06
Bra029975.1-P	Field mustard	cytosol	22.15	21.9
Bra037833.1-P	Field mustard	cytosol	21.23	20.99

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra025442
EnsemblPlants:Bra025442.1	EnsemblPlants:Bra025442.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M4E9I6	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF61	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000254387C	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT5G37490 (E=1e-181) | U-box domain-containing protein

Coordinates

chrA04:+:8715344..8716660

Molecular Weight (calculated)

48620.4 Da

IEP (calculated)

5.688

GRAVY (calculated)

-0.005

Length

438 amino acids

Sequence
(BLAST)

001: MGFTWGMRLR GASKKKIAPV MSWSESTSEP DITIPPEFQC PISIDLMKDP VIISTGITYD RTSIEKWIDS GNNTCPVTNT VLTTFDQIPN HTIRKMIQGW
101: CVEIGSSLIE RIPTPRVPLM PCEVYEICRK LSSATRRGDY EKCEEIIWRI KKLEKESEKN RNCIIENGVA LVLCDCFEKF SADEKSTSLL GKILSLLTWM
201: VPIGWEGLTT LASASSFRCI AGFLRSKDDT VRENAAFLLK EILSLEETQV HAFAEENGVA AAFFKLIRDS VSSNATKSSL IAVSQMVLAK PEIASVFLEI
301: GLVNQTVEMI IDGENSVCEK ALAVLDAVCE TSEGIKEVRK NALVMPLLVK KILKVSEQGT GSSVSAILKL CKAGKASTVE EAVRLGAFQK MFLVLQVGYG
401: EETKEKATEL LKMMNTQMKL MSDDVDSSME FKYLKKPF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.