Factsheet for Os02t0738200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G312600.1	Wheat	mitochondrion	73.9	74.07
TraesCS6D01G292200.1	Wheat	mitochondrion	73.68	74.01
TraesCS6B01G342800.1	Wheat	mitochondrion	73.46	73.79
Zm00001d017976_P001	Maize	mitochondrion	70.61	71.24
EES05563	Sorghum	mitochondrion	72.15	71.21
Os06t0248500-00	Rice	mitochondrion	66.45	66.89
HORVU6Hr1G077120.1	Barley	plastid	73.46	65.43
GSMUA_Achr6P02470_001	Banana	mitochondrion	42.76	51.32
GSMUA_Achr7P18640_001	Banana	mitochondrion	41.89	50.4
GSMUA_Achr6P11310_001	Banana	cytosol	41.23	49.47
GSMUA_Achr11P...	Banana	mitochondrion	45.39	48.71
GSMUA_Achr10P...	Banana	cytosol	40.13	48.67
Os03t0240600-01	Rice	plastid	47.37	48.54
VIT_01s0011g06140.t01	Wine grape	mitochondrion	45.18	46.61
GSMUA_Achr3P02030_001	Banana	plastid	40.35	43.91
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	42.11	42.57
KRH48691	Soybean	cytosol	40.57	42.33
KRH72959	Soybean	cytosol, mitochondrion	40.35	42.01
KRH39018	Soybean	mitochondrion	40.13	41.78
Solyc01g005160.2.1	Tomato	mitochondrion	41.23	41.78
Solyc04g008100.1.1	Tomato	cytosol	40.35	41.63
KRH17309	Soybean	cytosol, mitochondrion	39.91	41.46
PGSC0003DMT400075778	Potato	mitochondrion	39.91	41.18
KRG97963	Soybean	mitochondrion	38.6	40.84
KRH30918	Soybean	mitochondrion	38.6	40.46
PGSC0003DMT400073836	Potato	cytosol	35.31	38.42
Solyc11g006030.1.1	Tomato	cytosol	35.53	37.67
Bra039752.1-P	Field mustard	cytosol	32.24	34.83
CDY16432	Canola	cytosol	32.46	34.58
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	32.89	34.48
Bra025442.1-P	Field mustard	mitochondrion	33.11	34.47
AT3G02840.1	Thale cress	mitochondrion	28.51	34.3
CDY50319	Canola	cytosol	32.02	34.19
CDY27655	Canola	mitochondrion	32.68	34.02
CDX92016	Canola	mitochondrion	27.41	33.97
Bra040605.1-P	Field mustard	mitochondrion	27.85	33.87
CDY51529	Canola	mitochondrion	27.85	33.87
CDX99694	Canola	mitochondrion	32.46	33.79
AT1G66160.1	Thale cress	cytosol	31.8	33.64
CDY28714	Canola	mitochondrion	27.63	33.6
Os04t0686000-01	Rice	cytosol	30.04	33.17
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	26.75	33.15
Bra001067.1-P	Field mustard	mitochondrion	26.75	33.15
Os01t0865700-00	Rice	plastid	29.39	32.92
Os02t0539200-01	Rice	cytosol	30.04	31.0
Os02t0548700-00	Rice	cytosol, extracellular, plastid	27.85	30.46
Os02t0690600-01	Rice	cytosol	23.68	25.41
Os04t0437300-01	Rice	cytosol	23.03	24.65
Os04t0589700-01	Rice	cytosol	21.93	23.75
Os03t0232600-01	Rice	cytosol	23.9	23.75
Os12t0161100-00	Rice	cytosol	22.59	23.46
Os04t0418500-01	Rice	plastid	23.03	23.28
Os02t0540700-00	Rice	plastid	25.66	23.17
Os05t0439400-01	Rice	plasma membrane	21.49	21.68

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4330663	EMBL:AK243317	InterPro:ARM-like
InterPro:ARM-type_fold	UniProt:B7FA87	ProteinID:BAF09973.2	ProteinID:BAS80822.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EnsemblPlantsGene:Os02g0738200	EnsemblPlants:Os02t0738200-01	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000188B048	InterPro:Ubox_domain	RefSeq:XP_015623806.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

plant U-box-containing protein 40, U-box protein 40Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0738200-01)

Coordinates

chr2:-:30805988..30807610

Molecular Weight (calculated)

49135.5 Da

IEP (calculated)

8.118

GRAVY (calculated)

0.012

Length

456 amino acids

Sequence
(BLAST)

001: MVTPMTRARA RARAVRLAVS EIPLAVRRSA RQQQQPPEPA ADVPDHFLCP ISLDMMRDPV TAPTGITYDR DGVEVWLERG RPTCPVTGRP LRPEELVPNH
101: ATRRMIQEWC VANRALGVER VPTPRVPVSA ADAREILEGV AAAARRGDAA ACGRMVARAR ALGKESERNR RCLASAGAER ALALAFSRLA AASTDQQAEA
201: RACALEEILA ALVVFFPLDE ESRRCIASPP SLDALVSILS HGEQVTRVSA VVVLREIASS CDNQCLEAMS KANAMYDALV NLVAKPVSPQ ATKAALVTAY
301: YLVKNDIEHA ASRLVDLGTV ELLVELLADA DKGTTEKALA VLDTVLVAAK ARDRAYAHAL AVPVLAKKTM HVSDMATEFA VSALWRLCKN SPADGGCKAE
401: ALQVGAFQKL LLLLQLGCDG VTKERASELL RLLNASRDST ECIETADFKG LKRPFI

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.