Factsheet for Os04t0418500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0761200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	Os02t0761200-01	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	80.04	81.86
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	79.6	81.41
TraesCS2B01G315100.1	Wheat	cytosol	79.38	81.18
OQU81548	Sorghum	mitochondrion	78.49	79.19
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	76.72	77.93
HORVU2Hr1G074130.1	Barley	plastid	79.38	69.11
GSMUA_Achr8P30420_001	Banana	mitochondrion	41.02	67.77
Os02t0540700-00	Rice	plastid	70.73	63.17
GSMUA_Achr6P18140_001	Banana	cytosol	51.44	56.72
GSMUA_Achr10P...	Banana	plastid	46.34	54.43
KRH53869	Soybean	cytosol	35.7	38.61
VIT_04s0044g00870.t01	Wine grape	cytosol	35.03	38.35
PGSC0003DMT400002079	Potato	cytosol	35.48	38.28
VIT_18s0166g00190.t01	Wine grape	plasma membrane	33.92	38.25
KRH43397	Soybean	cytosol	34.37	37.08
KRH59546	Soybean	cytosol	34.37	37.08
Solyc04g071030.1.1	Tomato	cytosol	34.81	36.77
KRH08734	Soybean	mitochondrion	32.82	35.75
CDX84538	Canola	cytosol	32.82	35.32
CDY08864	Canola	cytosol	32.59	35.08
Bra024318.1-P	Field mustard	cytosol	32.59	35.08
Solyc11g005700.1.1	Tomato	cytosol	32.59	35.0
KRH70331	Soybean	mitochondrion	31.49	34.89
CDX75980	Canola	cytosol	32.59	34.67
Os05t0439400-01	Rice	plasma membrane	34.59	34.51
CDX92262	Canola	cytosol	31.49	34.38
PGSC0003DMT400065698	Potato	cytosol	31.93	34.29
AT5G09800.1	Thale cress	cytosol	31.04	34.23
CDX82332	Canola	cytosol	31.93	33.96
AT5G64660.1	Thale cress	cytosol	31.49	33.81
Bra001717.1-P	Field mustard	cytosol	31.71	33.73
Bra022347.1-P	Field mustard	cytosol	31.49	33.49
KRH36899	Soybean	cytosol	27.49	33.42
AT3G18710.1	Thale cress	cytosol	30.6	33.25
CDX99325	Canola	cytosol	30.82	32.86
CDY71041	Canola	cytosol	29.49	32.2
Bra037568.1-P	Field mustard	cytosol	29.49	32.2
Os01t0865700-00	Rice	plastid	26.16	28.99
Os02t0548700-00	Rice	cytosol, extracellular, plastid	26.39	28.54
Os04t0437300-01	Rice	cytosol	25.94	27.46
Os04t0686000-01	Rice	cytosol	24.17	26.39
Os06t0248500-00	Rice	mitochondrion	26.39	26.27
Os03t0232600-01	Rice	cytosol	26.39	25.93
Os02t0539200-01	Rice	cytosol	24.83	25.34
Os02t0690600-01	Rice	cytosol	23.73	25.18
Os03t0240600-01	Rice	plastid	24.83	25.17
Os04t0589700-01	Rice	cytosol	22.62	24.23
Os02t0738200-01	Rice	mitochondrion	23.28	23.03
Os12t0161100-00	Rice	cytosol	21.51	22.1

Protein Annotations

MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:4335817	UniProt:A0A0P0WAA1	InterPro:ARM-type_fold	ProteinID:BAS89171.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR013083	EnsemblPlantsGene:Os04g0418500	EnsemblPlants:Os04t0418500-01	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000393B7ED
InterPro:Ubox_domain	RefSeq:XP_015633891.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

plant U-box-containing protein 46, U-box protein 46Similar to photoperiod responsive protein. (Os04t0418500-01)

Coordinates

chr4:+:20690867..20692518

Molecular Weight (calculated)

46622.7 Da

IEP (calculated)

7.886

GRAVY (calculated)

0.064

Length

451 amino acids

Sequence
(BLAST)

001: MGRKESSTTT TTTAAAAAAA TRSMRLPPQH QALEVKIPSF FRCPISLDVM RSPVSLCTGV TYDRASIQRW LDSGNTTCPA TMLPLPSTDL VPNLTLRSLI
101: SHWSSSSPAT SGDASVTSSP AGLVRQVASP DADPSAALRQ LAAYLSDDDV DEFEKNALVG AGGAAEAVAS VLRRKGEREV GVEGCEAAVR VLAAVVAMDG
201: VEDANKRRVA AGLAADAAAS AASLARVMRG ASGLEARVDA ARLVEFLLAN AADEAREAVA ESAELVAELV RLVGPADEKG SLDARAVGAG LSCLATISRS
301: RRAARAEMVR AGTVRAAARA LRATAADPAA SARALRVLES AVGCAEGRAA LCEDAEQAVP AVVGRMMKAG RDGAEAAEAV LWAVCHKYRD RRAADAAAAS
401: EGGLTRLLLL LQSGCSPAAR QMALELLKIY KVNAKSCLAG YDSKTTHIMP F

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.