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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid, vacuole
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:vacuole
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001717.1-P Field mustard cytosol 98.82 98.82
CDX75980 Canola cytosol 93.16 93.16
CDY71041 Canola cytosol 77.12 79.18
CDX99325 Canola cytosol 77.83 78.01
CDX92262 Canola cytosol 75.47 77.48
AT3G18710.1 Thale cress cytosol 74.06 75.66
CDX84538 Canola cytosol 54.48 55.13
CDY08864 Canola cytosol 54.25 54.89
VIT_04s0044g00870.t01 Wine grape cytosol 48.58 50.0
KRH43397 Soybean cytosol 48.82 49.52
KRH59546 Soybean cytosol 48.35 49.04
KRH53869 Soybean cytosol 47.64 48.44
GSMUA_Achr8P30420_001 Banana mitochondrion 29.95 46.52
PGSC0003DMT400065698 Potato cytosol 42.45 42.86
KRH36899 Soybean cytosol 37.5 42.86
Solyc11g005700.1.1 Tomato cytosol 42.22 42.62
GSMUA_Achr10P... Banana plastid 32.31 35.68
GSMUA_Achr6P18140_001 Banana cytosol 34.2 35.45
GSMUA_Achr5P01020_001 Banana cytosol 33.02 34.91
Zm00001d016719_P001 Maize cytosol 33.49 33.1
TraesCS2B01G315100.1 Wheat cytosol 33.73 32.43
TraesCS2D01G296700.1 Wheat cytosol, mitochondrion, plastid 33.73 32.43
TraesCS2A01G298600.1 Wheat cytosol, mitochondrion, plastid 33.49 32.2
Zm00001d050689_P001 Maize cytosol 32.31 31.93
Os04t0418500-01 Rice plastid 33.96 31.93
EES05205 Sorghum cytosol 33.96 31.79
OQU81548 Sorghum mitochondrion 33.02 31.32
Zm00001d025379_P001 Maize cytosol, mitochondrion, peroxisome, plastid 32.31 30.86
Os02t0540700-00 Rice plastid 33.49 28.12
HORVU2Hr1G074130.1 Barley plastid 33.49 27.41
Os05t0439400-01 Rice plasma membrane 28.54 26.77
KXG22102 Sorghum mitochondrion 28.77 26.7
Zm00001d038280_P001 Maize cytosol 27.83 26.11
CDX84587 Canola cytosol 24.53 25.43
TraesCS1B01G284200.1 Wheat mitochondrion 27.12 25.39
CDY23218 Canola cytosol 23.58 25.25
CDX78096 Canola cytosol 23.11 25.19
CDX95337 Canola cytosol 24.29 25.18
TraesCS1D01G274600.1 Wheat mitochondrion 26.89 25.17
HORVU1Hr1G074180.1 Barley mitochondrion, plastid 26.89 25.17
CDX92328 Canola cytosol 25.0 25.06
CDX79645 Canola cytosol 24.06 25.0
TraesCS1A01G274800.1 Wheat mitochondrion 26.65 24.94
CDX75084 Canola cytosol 23.82 24.88
CDY50158 Canola cytosol 24.29 24.7
CDX95458 Canola cytosol 24.29 24.7
CDX84168 Canola cytosol 23.58 24.63
CDX99233 Canola cytosol, peroxisome, plastid 24.29 24.47
CDY59599 Canola cytosol 23.58 24.45
CDY40422 Canola cytosol 23.58 24.27
CDY32070 Canola cytosol 23.58 24.27
CDY27655 Canola mitochondrion 24.06 23.29
CDY69247 Canola cytosol 24.06 23.02
CDX99694 Canola mitochondrion 23.58 22.83
CDY18670 Canola cytosol 23.82 22.8
CDX83098 Canola cytosol 23.58 22.57
CDY53920 Canola cytosol 23.11 22.48
CDY59286 Canola cytosol 22.41 22.46
CDY16513 Canola cytosol 22.41 22.46
CDY51529 Canola mitochondrion 19.81 22.4
CDY53333 Canola cytosol 23.58 22.37
CDY47911 Canola cytosol 22.17 22.27
CDY50319 Canola cytosol 21.93 21.78
CDX92016 Canola mitochondrion 18.87 21.74
CDY16432 Canola cytosol 21.93 21.73
CDY28714 Canola mitochondrion 19.1 21.6
CDY67531 Canola cytosol 22.41 21.25
CDY01063 Canola cytosol 21.93 21.14
CDY08490 Canola cytosol 21.93 21.04
CDX74232 Canola cytosol, extracellular, mitochondrion, plastid 18.16 20.92
CDX73849 Canola cytosol 22.41 20.34
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10GO:A0A078CZN4InterPro:ARM-likeInterPro:ARM-type_fold
EnsemblPlants:CDX82332ProteinID:CDX82332ProteinID:CDX82332.1GO:GO:0003674GO:GO:0003824GO:GO:0004842
GO:GO:0005488GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567
GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00137450001InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
PFAM:PF04564PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF20SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EE54F1InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
BnaA03g34890D
Coordinates
chrLK031828:+:644752..646091
Molecular Weight (calculated)
46987.6 Da
IEP (calculated)
9.606
GRAVY (calculated)
-0.018
Length
424 amino acids
Sequence
(BLAST)
001: MGRDETETYI TVPSLFRCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQIL RTKEFVPNLT LQRLIKAWSD SVGRRAGVSP PRGVLTVEEV
101: NESLRRLSLE KDDEIRLENL SRIVRFAKDS EANREFLWKR KDFAAMLVHI IAAVDGGTRA TAKIKLGLLA IMILDTIIKG GKERDRERLS KLMLTDVGGC
201: LTALLLAIQR GNLETKIESV RVLEMISFDQ KSKVIISERD GIVPELIKSI SSKTDPSLME ASLSFLITIS ASKRVRSKLV AEKTITKIKD ILLTETTSVA
301: VTEKSLKLLE TLSSNREGRS EICGGDGGRC VEGVVRKLLK VSATATEHAV TILWCLCYVF REDKRAEETV VRCNGVTKLL VVIQSSCSPV VRQMAKDLIK
401: VLKVNTSASV LSAYETNTTH ITPF
Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)
001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF
Arabidopsis Description
PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.