CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014206.1-P	Field mustard	cytosol	100.0	100.0
CDY59286	Canola	cytosol	98.35	98.35
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	88.89	89.31
CDY50158	Canola	cytosol	80.61	81.77
CDX95458	Canola	cytosol	79.91	81.06
CDX99233	Canola	cytosol, peroxisome, plastid	79.43	79.81
CDX92328	Canola	cytosol	79.2	79.2
KRH50316	Soybean	cytosol, plasma membrane, plastid	66.9	68.36
VIT_03s0063g00180.t01	Wine grape	cytosol	66.9	68.19
KRH70657	Soybean	cytosol	66.43	67.71
Solyc01g107980.2.1	Tomato	cytosol	66.19	67.47
PGSC0003DMT400066588	Potato	cytosol	65.96	67.23
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	43.26	53.04
EES06938	Sorghum	extracellular	48.7	50.61
Zm00001d050712_P001	Maize	extracellular, plastid	48.7	50.37
Os02t0548700-00	Rice	cytosol, extracellular, plastid	49.65	50.36
GSMUA_Achr1P13220_001	Banana	cytosol	47.04	50.25
TraesCS6D01G237900.1	Wheat	extracellular	47.75	49.63
TraesCS6B01G268300.1	Wheat	extracellular	47.75	49.63
TraesCS6A01G256700.1	Wheat	extracellular	47.75	49.63
Zm00001d016764_P001	Maize	extracellular	48.7	49.28
GSMUA_Achr6P25670_001	Banana	cytosol	48.7	48.13
CDX75084	Canola	cytosol	30.02	31.28
CDX78096	Canola	cytosol	28.37	30.85
CDX84587	Canola	cytosol	29.79	30.81
CDX84168	Canola	cytosol	29.55	30.79
CDX79645	Canola	cytosol	29.55	30.64
CDX95337	Canola	cytosol	29.55	30.56
CDY32070	Canola	cytosol	29.55	30.34
CDY40422	Canola	cytosol	29.55	30.34
CDY23218	Canola	cytosol	28.37	30.3
CDY59599	Canola	cytosol	28.84	29.83
CDY27655	Canola	mitochondrion	30.73	29.68
CDX99694	Canola	mitochondrion	30.5	29.45
CDY50319	Canola	cytosol	26.0	25.76
CDY16432	Canola	cytosol	25.77	25.47
CDY01063	Canola	cytosol	25.77	24.77
CDY53920	Canola	cytosol	25.53	24.77
CDY47911	Canola	cytosol	24.59	24.64
CDY08490	Canola	cytosol	25.53	24.43
CDY67531	Canola	cytosol	25.53	24.16
CDX83098	Canola	cytosol	25.3	24.15
CDX92262	Canola	cytosol	23.17	23.73
CDY53333	Canola	cytosol	25.06	23.71
CDY08864	Canola	cytosol	23.4	23.63
CDX73849	Canola	cytosol	26.0	23.55
CDY69247	Canola	cytosol	24.59	23.48
CDX84538	Canola	cytosol	23.17	23.39
CDY18670	Canola	cytosol	24.35	23.25
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	20.09	23.1
CDX75980	Canola	cytosol	22.93	22.88
CDX92016	Canola	mitochondrion	19.62	22.55
CDX82332	Canola	cytosol	22.46	22.41
CDY71041	Canola	cytosol	21.75	22.28
CDX99325	Canola	cytosol	22.22	22.22
CDY51529	Canola	mitochondrion	18.91	21.33
CDY28714	Canola	mitochondrion	18.68	21.07

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078FVT3	UniProt:A0A078FVT3	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY16513	ProteinID:CDY16513	ProteinID:CDY16513.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00091118001	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI000254635C	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA08g02540DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078FVT3]

Coordinates

chrLK032064:+:638865..640136

Molecular Weight (calculated)

45958.6 Da

IEP (calculated)

6.618

GRAVY (calculated)

0.085

Length

423 amino acids

Sequence
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLELMTDP VTVSTGQTYD RTSIESWIAT GNTSCPVTRL PLSDFTLIPN HTLRRLIQEW CVANRSSGVE RIPTPKQPAD
101: PISVRSLLSQ ASAISGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DVDVGVETSS SEVVTESLAL LVMFHMTEGE CESISSDPGR
201: VGFMTRLLFD SSIENRVNAA ALVEMVLTGS KSTDLKMIIS GSGSVFEGVM DLLRSSVSSR RALKIGIKAL FALCLVKQTR HLAISAGAPG TLIDRLAADF
301: DRCDTERGLA TVELLCRLPE GCAAFGEHAL TVPLLVKTIL RVSDRATEYA AGALLALCTA EERCRDEAAA AGLVTQLLLL VQSDCTERAK RKAQMLLKLL
401: RDSWPDDTLV NSDEFGRSEV APF

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.