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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G35930.1 CDX89437 AT4G25200.1 21798944
AT2G35930.1 CDY03368 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005309.1-P Field mustard cytosol 95.32 100.0
CDX84168 Canola cytosol 96.31 96.31
CDX79645 Canola cytosol 89.9 89.46
CDY40422 Canola cytosol 90.39 89.08
CDY32070 Canola cytosol 89.66 88.35
CDX84587 Canola cytosol 88.92 88.26
AT2G35930.1 Thale cress cytosol 89.16 88.08
CDY59599 Canola cytosol 81.28 80.68
CDX78096 Canola cytosol 77.09 80.46
CDX95337 Canola cytosol 79.8 79.22
CDY23218 Canola cytosol 76.85 78.79
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 60.1 59.37
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 59.85 59.12
KRH68014 Soybean cytosol 59.11 57.14
GSMUA_Achr7P03220_001 Banana cytosol 43.35 56.77
Solyc01g007040.2.1 Tomato cytosol, nucleus, vacuole 24.88 56.42
PGSC0003DMT400054949 Potato cytosol 56.4 56.4
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 56.4 55.99
KRH72176 Soybean cytosol 57.64 55.98
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 55.91 55.91
KRH35744 Soybean cytosol 57.64 55.85
KRH32856 Soybean cytosol 57.39 55.48
Solyc01g007020.2.1 Tomato cytosol 55.66 55.39
KRG96257 Soybean cytosol 57.14 55.37
KRG96268 Soybean cytosol 56.9 55.13
PGSC0003DMT400055045 Potato cytosol 28.57 54.98
Solyc01g007030.2.1 Tomato cytosol 28.57 54.98
Solyc01g007010.2.1 Tomato cytosol 55.17 54.9
PGSC0003DMT400055050 Potato cytosol 52.96 54.85
PGSC0003DMT400055051 Potato cytosol 53.2 54.82
PGSC0003DMT400054948 Potato cytosol 38.18 54.39
HORVU2Hr1G123130.1 Barley cytosol 6.16 54.35
GSMUA_Achr5P01000_001 Banana cytosol 45.07 51.55
GSMUA_Achr11P... Banana cytosol 46.31 50.4
PGSC0003DMT400054947 Potato cytosol 37.44 50.33
GSMUA_Achr8P30400_001 Banana cytosol 44.83 49.59
GSMUA_Achr10P... Banana cytosol 44.34 49.32
EES06927 Sorghum cytosol 47.54 45.52
OQU85086 Sorghum cytosol 47.78 45.43
TraesCS6D01G367100.1 Wheat cytosol 46.55 45.0
TraesCS6B01G421900.1 Wheat cytosol 46.31 44.76
Os04t0686000-01 Rice cytosol 45.32 44.55
TraesCS6D01G367600.1 Wheat cytosol 46.31 44.44
TraesCS6A01G382300.1 Wheat cytosol 45.81 44.08
TraesCS6B01G421400.1 Wheat cytosol 45.57 44.05
TraesCS6B01G420600.1 Wheat cytosol 45.32 43.81
Os01t0865700-00 Rice plastid 43.84 43.73
TraesCS6A01G382800.1 Wheat cytosol 45.32 43.6
Os02t0539200-01 Rice cytosol 47.29 43.44
EES03937 Sorghum plastid 43.6 43.38
Zm00001d042738_P001 Maize cytosol 43.35 43.14
TraesCS3D01G370000.1 Wheat cytosol 44.34 43.06
HORVU3Hr1G083500.1 Barley cytosol 43.6 42.86
TraesCS3A01G376900.1 Wheat cytosol 44.09 42.82
TraesCS3B01G409400.1 Wheat cytosol 43.84 42.69
Zm00001d016730_P001 Maize cytosol 45.32 42.2
HORVU6Hr1G089560.1 Barley plastid 46.8 42.13
HORVU6Hr1G089590.1 Barley plastid 46.8 42.04
TraesCS2B01G314500.1 Wheat cytosol 44.34 41.76
EES13136 Sorghum cytosol 43.6 41.55
TraesCS2A01G298000.1 Wheat cytosol 44.09 41.53
TraesCS2D01G296100.1 Wheat cytosol 43.6 41.07
Zm00001d003745_P001 Maize nucleus 44.83 40.62
HORVU0Hr1G003810.1 Barley cytosol 43.1 40.6
KXG26241 Sorghum cytosol 45.32 39.83
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 37.19 38.52
CDY47911 Canola cytosol 39.66 38.15
CDY08490 Canola cytosol 40.15 36.88
CDY67531 Canola cytosol 40.15 36.47
CDY53920 Canola cytosol 38.92 36.24
CDY01063 Canola cytosol 39.16 36.14
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 35.96 34.19
CDX73849 Canola cytosol 39.16 34.05
TraesCS2B01G601300.1 Wheat cytosol 35.47 33.72
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 35.47 33.72
TraesCS6B01G209000.1 Wheat cytosol 32.51 31.21
CDX99233 Canola cytosol, peroxisome, plastid 32.27 31.12
TraesCS6A01G176800.1 Wheat cytosol 33.0 31.02
CDX95458 Canola cytosol 31.77 30.94
CDX92328 Canola cytosol 32.02 30.73
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 32.76 30.72
TraesCS6D01G167300.1 Wheat cytosol 32.76 30.72
CDY50158 Canola cytosol 31.53 30.7
HORVU2Hr1G123050.1 Barley cytosol 25.37 30.65
CDY16513 Canola cytosol 31.28 30.02
CDY59286 Canola cytosol 31.28 30.02
KXG23010 Sorghum cytosol 33.0 29.52
GSMUA_Achr9P29630_001 Banana cytosol 44.83 29.45
Os12t0161100-00 Rice cytosol 31.53 29.16
CDY27655 Canola mitochondrion 30.3 28.08
CDY50319 Canola cytosol 29.06 27.63
CDX99694 Canola mitochondrion 29.8 27.63
CDY16432 Canola cytosol 29.06 27.57
CDX74232 Canola cytosol, extracellular, mitochondrion, plastid 24.38 26.9
CDX92016 Canola mitochondrion 24.14 26.63
CDX92262 Canola cytosol 26.6 26.15
CDX99325 Canola cytosol 26.35 25.3
CDY08864 Canola cytosol 25.12 24.34
CDX84538 Canola cytosol 24.88 24.11
CDY71041 Canola cytosol 24.38 23.97
CDX75980 Canola cytosol 24.88 23.82
CDX82332 Canola cytosol 24.88 23.82
CDY51529 Canola mitochondrion 21.67 23.47
CDY28714 Canola mitochondrion 21.43 23.2
CDX83098 Canola cytosol 23.4 21.44
CDY69247 Canola cytosol 23.4 21.44
Zm00001d023480_P001 Maize cytosol 29.31 21.29
CDY53333 Canola cytosol 23.4 21.25
CDY18670 Canola cytosol 23.15 21.22
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1GO:A0A078CG56InterPro:ARM-likeInterPro:ARM-type_fold
EnsemblPlants:CDX75084ProteinID:CDX75084ProteinID:CDX75084.1GO:GO:0003674GO:GO:0003824GO:GO:0004842
GO:GO:0005488GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567
GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00117125001InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
PFAM:PF04564PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF65SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EE843AInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
BnaA05g08300D
Coordinates
chrLK031802:-:2422192..2423412
Molecular Weight (calculated)
45253.5 Da
IEP (calculated)
8.435
GRAVY (calculated)
-0.021
Length
406 amino acids
Sequence
(BLAST)
001: MDEEIEIPPF FLCPISLEIM KDPVIVSTGI TYDRDSIEKW LFSAKKNSCP VTKQDITDAD LTPNHTLRRL IQSWCTVNAS HGVERIPTPR PPISKSEIEK
101: LLKDSASSHQ NLAKCFKRLR HIVSENASNK RCLEAAGVPE FLATIVSNKD SSMSLTDEAL SLLYHLDTSE TCLKNLLNNK KGNDIVNSLT KIMNRGIYES
201: RAYATLLLKN ILEVADPMQI MTLKPAIFTE VVQILDDRIS HKATKSALHI LVNVCPWGRN RHKAVEAGVI SMIIELLMDE SFSSDRRGPE MAMVVLDLLC
301: QCAEGRAEFL NHGAAIAVVC KKILRVSQTA SDRAVRVLFS VGRFCATPAL LNEMLQLGVV AKLCLVLQVS CGSKTKEKAK ELLKLHARIW RDSPCLTRNM
401: ILAYPS
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.