Factsheet for Solyc01g007000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, vacuole

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g123870.2.1
Solyc08g066070.1.1	golgi
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT3G52450.1	Solyc08g066070.1.1	AT1G07000.1	23170036
AT3G52450.1	Solyc08g066070.1.1	AT1G07000.1	23170036
AT3G52450.1	Solyc03g123870.2.1	AT5G49830.2	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007030.2.1	Tomato	cytosol	48.66	94.31
PGSC0003DMT400055045	Potato	cytosol	48.41	93.84
PGSC0003DMT400055051	Potato	cytosol	90.22	93.65
PGSC0003DMT400054949	Potato	cytosol	92.91	93.6
PGSC0003DMT400055050	Potato	cytosol	89.0	92.86
PGSC0003DMT400054948	Potato	cytosol	64.55	92.63
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	91.93	92.61
Solyc01g007020.2.1	Tomato	cytosol	91.93	92.16
Solyc01g007010.2.1	Tomato	cytosol	91.93	92.16
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	38.88	88.83
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	65.77	65.45
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	65.53	65.21
KRH35744	Soybean	cytosol	65.04	63.48
KRH68014	Soybean	cytosol	65.04	63.33
KRG96257	Soybean	cytosol	63.33	61.81
KRG96268	Soybean	cytosol	63.08	61.58
KRH32856	Soybean	cytosol	59.9	58.33
KRH72176	Soybean	cytosol	58.92	57.66
CDX78096	Canola	cytosol	54.28	57.07
CDY59599	Canola	cytosol	56.97	56.97
CDX84168	Canola	cytosol	56.48	56.9
CDX95337	Canola	cytosol	56.72	56.72
CDX75084	Canola	cytosol	55.99	56.4
CDX79645	Canola	cytosol	56.23	56.37
CDY40422	Canola	cytosol	56.72	56.31
Bra017278.1-P	Field mustard	cytosol	56.72	56.31
CDY32070	Canola	cytosol	56.72	56.31
GSMUA_Achr11P...	Banana	cytosol	51.1	56.03
Bra023044.1-P	Field mustard	cytosol	55.99	55.99
GSMUA_Achr7P03220_001	Banana	cytosol	42.3	55.81
CDY23218	Canola	cytosol	53.79	55.56
Bra005309.1-P	Field mustard	cytosol	52.57	55.56
CDX84587	Canola	cytosol	55.5	55.5
AT2G35930.1	Thale cress	cytosol	55.26	54.99
Bra012803.1-P	Field mustard	cytosol	56.48	54.61
HORVU2Hr1G123130.1	Barley	cytosol	6.11	54.35
GSMUA_Achr8P30400_001	Banana	cytosol	48.41	53.95
Bra006925.1-P	Field mustard	cytosol	56.97	53.56
Bra033430.1-P	Field mustard	cytosol	55.5	53.54
AT3G52450.1	Thale cress	cytosol	56.48	53.1
Solyc11g068920.1.1	Tomato	cytosol	51.83	52.48
Solyc01g009330.1.1	Tomato	cytosol	54.52	52.35
GSMUA_Achr10P...	Banana	cytosol	46.7	52.33
GSMUA_Achr5P01000_001	Banana	cytosol	43.28	49.86
TraesCS6D01G367100.1	Wheat	cytosol	46.45	45.24
TraesCS6D01G367600.1	Wheat	cytosol	46.7	45.15
OQU85086	Sorghum	cytosol	46.94	44.96
EES06927	Sorghum	cytosol	46.45	44.81
Os04t0686000-01	Rice	cytosol	45.23	44.79
Solyc01g009320.1.1	Tomato	cytosol	45.48	44.5
Os02t0539200-01	Rice	cytosol	47.92	44.34
TraesCS6B01G421400.1	Wheat	cytosol	45.48	44.29
TraesCS6B01G421900.1	Wheat	cytosol	45.48	44.29
TraesCS6B01G420600.1	Wheat	cytosol	45.48	44.29
TraesCS6A01G382800.1	Wheat	cytosol	45.48	44.08
TraesCS6A01G382300.1	Wheat	cytosol	45.48	44.08
HORVU0Hr1G003810.1	Barley	cytosol	45.97	43.62
TraesCS2B01G314500.1	Wheat	cytosol	45.97	43.62
TraesCS2D01G296100.1	Wheat	cytosol	45.48	43.16
TraesCS2A01G298000.1	Wheat	cytosol	45.48	43.16
Os01t0865700-00	Rice	plastid	42.54	42.75
EES13136	Sorghum	cytosol	44.01	42.25
Zm00001d016730_P001	Maize	cytosol	44.99	42.2
HORVU6Hr1G089560.1	Barley	plastid	45.72	41.46
HORVU6Hr1G089590.1	Barley	plastid	45.72	41.37
Solyc06g074140.1.1	Tomato	cytosol	42.3	41.19
TraesCS3B01G409400.1	Wheat	cytosol	41.81	41.01
TraesCS3D01G370000.1	Wheat	cytosol	41.81	40.91
TraesCS3A01G376900.1	Wheat	cytosol	41.81	40.91
HORVU3Hr1G083500.1	Barley	cytosol	41.08	40.68
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	38.88	40.56
Zm00001d003745_P001	Maize	nucleus	43.77	39.96
EES03937	Sorghum	plastid	39.85	39.95
Solyc11g068940.1.1	Tomato	cytosol	40.59	39.24
KXG26241	Sorghum	cytosol	44.25	39.18
Zm00001d042738_P001	Maize	cytosol	38.88	38.97
Solyc01g007050.1.1	Tomato	cytosol	37.65	36.58
TraesCS2B01G601300.1	Wheat	cytosol	36.67	35.13
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	36.67	35.13
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	36.43	34.89
TraesCS6B01G209000.1	Wheat	cytosol	33.74	32.62
HORVU2Hr1G123050.1	Barley	cytosol	26.65	32.44
TraesCS6D01G167300.1	Wheat	cytosol	33.99	32.1
TraesCS6A01G176800.1	Wheat	cytosol	33.74	31.94
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	33.74	31.87
Solyc01g080920.2.1	Tomato	cytosol	31.78	31.78
Solyc11g006030.1.1	Tomato	cytosol	33.25	31.63
Solyc04g008100.1.1	Tomato	cytosol	32.27	29.86
GSMUA_Achr9P29630_001	Banana	cytosol	44.74	29.61
Solyc01g107980.2.1	Tomato	cytosol	29.1	28.67
KXG23010	Sorghum	cytosol	31.78	28.63
Os12t0161100-00	Rice	cytosol	30.56	28.47
Solyc01g005160.2.1	Tomato	mitochondrion	31.05	28.22
Solyc11g005700.1.1	Tomato	cytosol	25.18	24.52
Solyc04g077610.2.1	Tomato	cytosol	23.96	23.39
Solyc05g056500.1.1	Tomato	cytosol	21.52	21.95
Zm00001d023480_P001	Maize	cytosol	28.85	21.11
Solyc04g071030.1.1	Tomato	cytosol	20.78	19.91

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4ASR6	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF54
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g007000.2	EnsemblPlants:Solyc01g007000.2.1	UniParc:UPI00027626E8
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4ASR6]

Coordinates

chr1:+:1567768..1569141

Molecular Weight (calculated)

45654.2 Da

IEP (calculated)

9.112

GRAVY (calculated)

-0.022

Length

409 amino acids

Sequence
(BLAST)

001: MEEIQIPPYF ICPISLEIMK DPVTISTGIT YDRENIEKWI FSAKNNTCPV TKQSLITGIE LTPNVTLRRL IQSWCTINAS HGIERFPTPK PPISKPQIIK
101: LLKEAKSPKM QMKSLKTLRS IAFENDANKR CMESAGAMEF LASIINNNSN EVFEEEEGFM SIKDEALSIL YQLKLSENGL RSLIMSGNGG FIESLTRVMQ
201: HGSYESRAYA IMLMKDMFEV STPTPLLSLK KEFFIQVVQV LRDEISQKAM KASLQVLVNA CPFGRNRVKA AEAGAVRVLV DLLLDSSEKR VCELMLILLD
301: QLCQSAEGRA ELLNHPGGLA IVSKKILRVS KVGSERAIKI LHSISKFSST PSVVQEMLSL GVVTKLCLVL QVDCGSKAKE RAREILKFHA KAWRNSPCIS
401: NNLLSSYPL

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.