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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra023044.1-P Field mustard cytosol 99.51 99.51
CDX79645 Canola cytosol 96.33 96.57
CDY40422 Canola cytosol 91.69 91.02
CDY32070 Canola cytosol 91.2 90.53
AT2G35930.1 Thale cress cytosol 90.22 89.78
CDX75084 Canola cytosol 88.26 88.92
CDX84168 Canola cytosol 87.78 88.42
CDY59599 Canola cytosol 80.68 80.68
CDX78096 Canola cytosol 76.28 80.21
CDX95337 Canola cytosol 80.2 80.2
CDY23218 Canola cytosol 76.53 79.04
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 59.9 59.61
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 59.66 59.37
KRH68014 Soybean cytosol 58.19 56.67
GSMUA_Achr7P03220_001 Banana cytosol 42.79 56.45
PGSC0003DMT400054949 Potato cytosol 55.75 56.16
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 55.26 55.66
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 55.5 55.5
PGSC0003DMT400055045 Potato cytosol 28.61 55.45
Solyc01g007030.2.1 Tomato cytosol 28.61 55.45
KRH35744 Soybean cytosol 56.72 55.37
Solyc01g007040.2.1 Tomato cytosol, nucleus, vacuole 24.21 55.31
PGSC0003DMT400055050 Potato cytosol 52.81 55.1
KRH72176 Soybean cytosol 55.99 54.78
PGSC0003DMT400054948 Potato cytosol 38.14 54.74
Solyc01g007010.2.1 Tomato cytosol 54.52 54.66
KRG96257 Soybean cytosol 55.99 54.65
PGSC0003DMT400055051 Potato cytosol 52.57 54.57
KRG96268 Soybean cytosol 55.75 54.42
Solyc01g007020.2.1 Tomato cytosol 54.28 54.41
KRH32856 Soybean cytosol 55.5 54.05
HORVU2Hr1G123130.1 Barley cytosol 5.87 52.17
GSMUA_Achr5P01000_001 Banana cytosol 45.23 52.11
PGSC0003DMT400054947 Potato cytosol 37.9 51.32
GSMUA_Achr8P30400_001 Banana cytosol 44.99 50.14
GSMUA_Achr11P... Banana cytosol 45.23 49.6
GSMUA_Achr10P... Banana cytosol 43.77 49.04
Os04t0686000-01 Rice cytosol 45.97 45.52
TraesCS6B01G421900.1 Wheat cytosol 46.45 45.24
TraesCS6D01G367100.1 Wheat cytosol 46.45 45.24
TraesCS6D01G367600.1 Wheat cytosol 46.7 45.15
TraesCS6A01G382300.1 Wheat cytosol 46.45 45.02
EES06927 Sorghum cytosol 46.45 44.81
OQU85086 Sorghum cytosol 46.7 44.73
TraesCS6B01G421400.1 Wheat cytosol 45.72 44.52
TraesCS6B01G420600.1 Wheat cytosol 45.48 44.29
TraesCS6A01G382800.1 Wheat cytosol 45.48 44.08
Os02t0539200-01 Rice cytosol 46.94 43.44
Os01t0865700-00 Rice plastid 43.03 43.24
EES03937 Sorghum plastid 42.79 42.89
Zm00001d042738_P001 Maize cytosol 42.79 42.89
TraesCS3D01G370000.1 Wheat cytosol 43.52 42.58
TraesCS3B01G409400.1 Wheat cytosol 43.28 42.45
Zm00001d016730_P001 Maize cytosol 45.23 42.43
HORVU3Hr1G083500.1 Barley cytosol 42.79 42.37
TraesCS3A01G376900.1 Wheat cytosol 43.28 42.34
HORVU6Hr1G089560.1 Barley plastid 46.45 42.13
HORVU6Hr1G089590.1 Barley plastid 46.45 42.04
HORVU0Hr1G003810.1 Barley cytosol 43.77 41.53
TraesCS2B01G314500.1 Wheat cytosol 43.77 41.53
EES13136 Sorghum cytosol 43.03 41.31
TraesCS2A01G298000.1 Wheat cytosol 43.52 41.3
TraesCS2D01G296100.1 Wheat cytosol 43.28 41.07
Zm00001d003745_P001 Maize nucleus 43.77 39.96
KXG26241 Sorghum cytosol 44.01 38.96
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 37.16 38.78
CDY47911 Canola cytosol 39.85 38.63
CDY08490 Canola cytosol 40.1 37.1
CDY53920 Canola cytosol 39.12 36.7
CDY01063 Canola cytosol 39.36 36.59
CDY67531 Canola cytosol 39.85 36.47
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 36.19 34.66
CDX73849 Canola cytosol 39.36 34.48
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 35.94 34.43
TraesCS2B01G601300.1 Wheat cytosol 35.7 34.19
HORVU2Hr1G123050.1 Barley cytosol 26.16 31.85
TraesCS6B01G209000.1 Wheat cytosol 31.54 30.5
CDX95458 Canola cytosol 31.05 30.46
CDX99233 Canola cytosol, peroxisome, plastid 31.3 30.4
TraesCS6A01G176800.1 Wheat cytosol 32.03 30.32
CDY50158 Canola cytosol 30.81 30.22
CDX92328 Canola cytosol 31.05 30.02
TraesCS6D01G167300.1 Wheat cytosol 31.78 30.02
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 31.54 29.79
CDY16513 Canola cytosol 30.81 29.79
CDY59286 Canola cytosol 30.81 29.79
GSMUA_Achr9P29630_001 Banana cytosol 44.74 29.61
KXG23010 Sorghum cytosol 32.76 29.52
Os12t0161100-00 Rice cytosol 31.3 29.16
CDY27655 Canola mitochondrion 30.56 28.54
CDX99694 Canola mitochondrion 30.07 28.08
CDY50319 Canola cytosol 28.61 27.4
CDY16432 Canola cytosol 28.61 27.34
CDX92262 Canola cytosol 26.89 26.63
CDX74232 Canola cytosol, extracellular, mitochondrion, plastid 23.72 26.36
CDX92016 Canola mitochondrion 23.47 26.09
CDY08864 Canola cytosol 25.92 25.3
CDX99325 Canola cytosol 26.16 25.3
CDX84538 Canola cytosol 25.67 25.06
CDY71041 Canola cytosol 25.18 24.94
CDX75980 Canola cytosol 25.67 24.76
CDX82332 Canola cytosol 25.43 24.53
CDY51529 Canola mitochondrion 22.25 24.27
CDY28714 Canola mitochondrion 21.52 23.47
CDY69247 Canola cytosol 24.21 22.35
CDY53333 Canola cytosol 24.21 22.15
CDY18670 Canola cytosol 23.96 22.12
CDX83098 Canola cytosol 23.72 21.9
Zm00001d023480_P001 Maize cytosol 28.85 21.11
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1GO:A0A078D612InterPro:ARM-likeInterPro:ARM-type_fold
EnsemblPlants:CDX84587ProteinID:CDX84587ProteinID:CDX84587.1GO:GO:0003674GO:GO:0003824GO:GO:0004842
GO:GO:0005488GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567
GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00141846001InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
PFAM:PF04564PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF65SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EDBA17InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
BnaA03g16430D
Coordinates
chrLK031838:+:211241..212803
Molecular Weight (calculated)
45627.2 Da
IEP (calculated)
8.819
GRAVY (calculated)
0.005
Length
409 amino acids
Sequence
(BLAST)
001: MDEEIEIPPF FLCPISLEIM KDPVIVSTGI TYDRDSIEKW LFSGKKNSCP VTKQDITDAD LTPNHTLRRL IQSWCTLNAS YGVERIPTPR SPICKSEIEK
101: LIKDSASSHK NKVKCLKRLR QIVSETTTNK RCLEVAGVPE FLATIISNNG VDSSMVSLSD EALSLLYHLE SSERVLKNLL NNKKGGNIVK SLIKIMQRGI
201: YESRAYATLL LKNILEVADP MQIMTLKPSV FTEVVQILDD RISHKATKAA MHVLVTICPW GRNRHKAVEA GAISVIIELL MDESFSSDRR GPEMAMVVLD
301: MLCQCAEGRA EFLNHGAAIA VVCKKILRVS QTASDRAVRV LLSVGRFCAT PALLHEMLQL GVVEKLFLVL QISCGSKTKE KAKELLKLHA RVWKDSPCLP
401: RNMILAYPS
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.