Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G35930.1 | CDX89437 | AT4G25200.1 | 21798944 |
AT2G35930.1 | CDY03368 | AT4G25200.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra023044.1-P | Field mustard | cytosol | 99.51 | 99.51 |
CDX79645 | Canola | cytosol | 96.33 | 96.57 |
CDY40422 | Canola | cytosol | 91.69 | 91.02 |
CDY32070 | Canola | cytosol | 91.2 | 90.53 |
AT2G35930.1 | Thale cress | cytosol | 90.22 | 89.78 |
CDX75084 | Canola | cytosol | 88.26 | 88.92 |
CDX84168 | Canola | cytosol | 87.78 | 88.42 |
CDY59599 | Canola | cytosol | 80.68 | 80.68 |
CDX78096 | Canola | cytosol | 76.28 | 80.21 |
CDX95337 | Canola | cytosol | 80.2 | 80.2 |
CDY23218 | Canola | cytosol | 76.53 | 79.04 |
VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 59.9 | 59.61 |
VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 59.66 | 59.37 |
KRH68014 | Soybean | cytosol | 58.19 | 56.67 |
GSMUA_Achr7P03220_001 | Banana | cytosol | 42.79 | 56.45 |
PGSC0003DMT400054949 | Potato | cytosol | 55.75 | 56.16 |
PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 55.26 | 55.66 |
Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 55.5 | 55.5 |
PGSC0003DMT400055045 | Potato | cytosol | 28.61 | 55.45 |
Solyc01g007030.2.1 | Tomato | cytosol | 28.61 | 55.45 |
KRH35744 | Soybean | cytosol | 56.72 | 55.37 |
Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 24.21 | 55.31 |
PGSC0003DMT400055050 | Potato | cytosol | 52.81 | 55.1 |
KRH72176 | Soybean | cytosol | 55.99 | 54.78 |
PGSC0003DMT400054948 | Potato | cytosol | 38.14 | 54.74 |
Solyc01g007010.2.1 | Tomato | cytosol | 54.52 | 54.66 |
KRG96257 | Soybean | cytosol | 55.99 | 54.65 |
PGSC0003DMT400055051 | Potato | cytosol | 52.57 | 54.57 |
KRG96268 | Soybean | cytosol | 55.75 | 54.42 |
Solyc01g007020.2.1 | Tomato | cytosol | 54.28 | 54.41 |
KRH32856 | Soybean | cytosol | 55.5 | 54.05 |
HORVU2Hr1G123130.1 | Barley | cytosol | 5.87 | 52.17 |
GSMUA_Achr5P01000_001 | Banana | cytosol | 45.23 | 52.11 |
PGSC0003DMT400054947 | Potato | cytosol | 37.9 | 51.32 |
GSMUA_Achr8P30400_001 | Banana | cytosol | 44.99 | 50.14 |
GSMUA_Achr11P... | Banana | cytosol | 45.23 | 49.6 |
GSMUA_Achr10P... | Banana | cytosol | 43.77 | 49.04 |
Os04t0686000-01 | Rice | cytosol | 45.97 | 45.52 |
TraesCS6B01G421900.1 | Wheat | cytosol | 46.45 | 45.24 |
TraesCS6D01G367100.1 | Wheat | cytosol | 46.45 | 45.24 |
TraesCS6D01G367600.1 | Wheat | cytosol | 46.7 | 45.15 |
TraesCS6A01G382300.1 | Wheat | cytosol | 46.45 | 45.02 |
EES06927 | Sorghum | cytosol | 46.45 | 44.81 |
OQU85086 | Sorghum | cytosol | 46.7 | 44.73 |
TraesCS6B01G421400.1 | Wheat | cytosol | 45.72 | 44.52 |
TraesCS6B01G420600.1 | Wheat | cytosol | 45.48 | 44.29 |
TraesCS6A01G382800.1 | Wheat | cytosol | 45.48 | 44.08 |
Os02t0539200-01 | Rice | cytosol | 46.94 | 43.44 |
Os01t0865700-00 | Rice | plastid | 43.03 | 43.24 |
EES03937 | Sorghum | plastid | 42.79 | 42.89 |
Zm00001d042738_P001 | Maize | cytosol | 42.79 | 42.89 |
TraesCS3D01G370000.1 | Wheat | cytosol | 43.52 | 42.58 |
TraesCS3B01G409400.1 | Wheat | cytosol | 43.28 | 42.45 |
Zm00001d016730_P001 | Maize | cytosol | 45.23 | 42.43 |
HORVU3Hr1G083500.1 | Barley | cytosol | 42.79 | 42.37 |
TraesCS3A01G376900.1 | Wheat | cytosol | 43.28 | 42.34 |
HORVU6Hr1G089560.1 | Barley | plastid | 46.45 | 42.13 |
HORVU6Hr1G089590.1 | Barley | plastid | 46.45 | 42.04 |
HORVU0Hr1G003810.1 | Barley | cytosol | 43.77 | 41.53 |
TraesCS2B01G314500.1 | Wheat | cytosol | 43.77 | 41.53 |
EES13136 | Sorghum | cytosol | 43.03 | 41.31 |
TraesCS2A01G298000.1 | Wheat | cytosol | 43.52 | 41.3 |
TraesCS2D01G296100.1 | Wheat | cytosol | 43.28 | 41.07 |
Zm00001d003745_P001 | Maize | nucleus | 43.77 | 39.96 |
KXG26241 | Sorghum | cytosol | 44.01 | 38.96 |
Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 37.16 | 38.78 |
CDY47911 | Canola | cytosol | 39.85 | 38.63 |
CDY08490 | Canola | cytosol | 40.1 | 37.1 |
CDY53920 | Canola | cytosol | 39.12 | 36.7 |
CDY01063 | Canola | cytosol | 39.36 | 36.59 |
CDY67531 | Canola | cytosol | 39.85 | 36.47 |
TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 36.19 | 34.66 |
CDX73849 | Canola | cytosol | 39.36 | 34.48 |
TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.94 | 34.43 |
TraesCS2B01G601300.1 | Wheat | cytosol | 35.7 | 34.19 |
HORVU2Hr1G123050.1 | Barley | cytosol | 26.16 | 31.85 |
TraesCS6B01G209000.1 | Wheat | cytosol | 31.54 | 30.5 |
CDX95458 | Canola | cytosol | 31.05 | 30.46 |
CDX99233 | Canola | cytosol, peroxisome, plastid | 31.3 | 30.4 |
TraesCS6A01G176800.1 | Wheat | cytosol | 32.03 | 30.32 |
CDY50158 | Canola | cytosol | 30.81 | 30.22 |
CDX92328 | Canola | cytosol | 31.05 | 30.02 |
TraesCS6D01G167300.1 | Wheat | cytosol | 31.78 | 30.02 |
HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 31.54 | 29.79 |
CDY16513 | Canola | cytosol | 30.81 | 29.79 |
CDY59286 | Canola | cytosol | 30.81 | 29.79 |
GSMUA_Achr9P29630_001 | Banana | cytosol | 44.74 | 29.61 |
KXG23010 | Sorghum | cytosol | 32.76 | 29.52 |
Os12t0161100-00 | Rice | cytosol | 31.3 | 29.16 |
CDY27655 | Canola | mitochondrion | 30.56 | 28.54 |
CDX99694 | Canola | mitochondrion | 30.07 | 28.08 |
CDY50319 | Canola | cytosol | 28.61 | 27.4 |
CDY16432 | Canola | cytosol | 28.61 | 27.34 |
CDX92262 | Canola | cytosol | 26.89 | 26.63 |
CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 23.72 | 26.36 |
CDX92016 | Canola | mitochondrion | 23.47 | 26.09 |
CDY08864 | Canola | cytosol | 25.92 | 25.3 |
CDX99325 | Canola | cytosol | 26.16 | 25.3 |
CDX84538 | Canola | cytosol | 25.67 | 25.06 |
CDY71041 | Canola | cytosol | 25.18 | 24.94 |
CDX75980 | Canola | cytosol | 25.67 | 24.76 |
CDX82332 | Canola | cytosol | 25.43 | 24.53 |
CDY51529 | Canola | mitochondrion | 22.25 | 24.27 |
CDY28714 | Canola | mitochondrion | 21.52 | 23.47 |
CDY69247 | Canola | cytosol | 24.21 | 22.35 |
CDY53333 | Canola | cytosol | 24.21 | 22.15 |
CDY18670 | Canola | cytosol | 23.96 | 22.12 |
CDX83098 | Canola | cytosol | 23.72 | 21.9 |
Zm00001d023480_P001 | Maize | cytosol | 28.85 | 21.11 |
Protein Annotations
Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078D612 | InterPro:ARM-like | InterPro:ARM-type_fold |
EnsemblPlants:CDX84587 | ProteinID:CDX84587 | ProteinID:CDX84587.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00141846001 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF65 | SMART:SM00504 | SUPFAM:SSF48371 |
SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EDBA17 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaA03g16430D
Coordinates
chrLK031838:+:211241..212803
Molecular Weight (calculated)
45627.2 Da
IEP (calculated)
8.819
GRAVY (calculated)
0.005
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEIEIPPF FLCPISLEIM KDPVIVSTGI TYDRDSIEKW LFSGKKNSCP VTKQDITDAD LTPNHTLRRL IQSWCTLNAS YGVERIPTPR SPICKSEIEK
101: LIKDSASSHK NKVKCLKRLR QIVSETTTNK RCLEVAGVPE FLATIISNNG VDSSMVSLSD EALSLLYHLE SSERVLKNLL NNKKGGNIVK SLIKIMQRGI
201: YESRAYATLL LKNILEVADP MQIMTLKPSV FTEVVQILDD RISHKATKAA MHVLVTICPW GRNRHKAVEA GAISVIIELL MDESFSSDRR GPEMAMVVLD
301: MLCQCAEGRA EFLNHGAAIA VVCKKILRVS QTASDRAVRV LLSVGRFCAT PALLHEMLQL GVVEKLFLVL QISCGSKTKE KAKELLKLHA RVWKDSPCLP
401: RNMILAYPS
101: LIKDSASSHK NKVKCLKRLR QIVSETTTNK RCLEVAGVPE FLATIISNNG VDSSMVSLSD EALSLLYHLE SSERVLKNLL NNKKGGNIVK SLIKIMQRGI
201: YESRAYATLL LKNILEVADP MQIMTLKPSV FTEVVQILDD RISHKATKAA MHVLVTICPW GRNRHKAVEA GAISVIIELL MDESFSSDRR GPEMAMVVLD
301: MLCQCAEGRA EFLNHGAAIA VVCKKILRVS QTASDRAVRV LLSVGRFCAT PALLHEMLQL GVVEKLFLVL QISCGSKTKE KAKELLKLHA RVWKDSPCLP
401: RNMILAYPS
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.