Factsheet for Zm00001d016730_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010602_P001	golgi
Zm00001d038447_P001	golgi
Zm00001d043015_P001	golgi
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT2G35930.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85086	Sorghum	cytosol	88.07	89.93
EES06927	Sorghum	cytosol	86.93	89.39
TraesCS6A01G382300.1	Wheat	cytosol	69.72	72.04
TraesCS6B01G421900.1	Wheat	cytosol	68.81	71.43
TraesCS6B01G420600.1	Wheat	cytosol	68.81	71.43
TraesCS6D01G367600.1	Wheat	cytosol	69.27	71.39
TraesCS6D01G367100.1	Wheat	cytosol	68.58	71.19
TraesCS6B01G421400.1	Wheat	cytosol	68.58	71.19
Os02t0539200-01	Rice	cytosol	72.02	71.04
TraesCS6A01G382800.1	Wheat	cytosol	68.58	70.85
HORVU6Hr1G089560.1	Barley	plastid	69.27	66.96
HORVU6Hr1G089590.1	Barley	plastid	69.27	66.81
Zm00001d003745_P001	Maize	nucleus	61.01	59.38
GSMUA_Achr7P03220_001	Banana	cytosol	37.39	52.58
GSMUA_Achr5P01000_001	Banana	cytosol	41.05	50.42
Solyc01g007030.2.1	Tomato	cytosol	23.17	47.87
Zm00001d042738_P001	Maize	cytosol	44.72	47.79
PGSC0003DMT400055045	Potato	cytosol	22.94	47.39
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	43.35	45.99
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	43.12	45.74
CDY40422	Canola	cytosol	42.89	45.39
Bra017278.1-P	Field mustard	cytosol	42.89	45.39
CDX75084	Canola	cytosol	42.2	45.32
CDX84587	Canola	cytosol	42.43	45.23
Bra023044.1-P	Field mustard	cytosol	42.43	45.23
CDY32070	Canola	cytosol	42.66	45.15
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	42.2	44.99
CDY23218	Canola	cytosol	40.83	44.95
CDX79645	Canola	cytosol	41.97	44.85
CDX84168	Canola	cytosol	41.74	44.83
AT2G35930.1	Thale cress	cytosol	42.2	44.77
KRH68014	Soybean	cytosol	43.12	44.76
CDX78096	Canola	cytosol	39.91	44.73
VIT_06s0009g00320.t01	Wine grape	cytosol	42.43	44.69
KRH22633	Soybean	cytosol, nucleus	41.28	44.66
Bra005309.1-P	Field mustard	cytosol	39.45	44.44
KRH26691	Soybean	cytosol	39.45	44.44
CDX95337	Canola	cytosol	41.51	44.25
KRG96257	Soybean	cytosol	42.43	44.15
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	39.68	44.13
Solyc01g007010.2.1	Tomato	cytosol	41.28	44.12
Solyc11g068920.1.1	Tomato	cytosol	40.83	44.06
CDY59599	Canola	cytosol	41.28	44.01
KRG96268	Soybean	cytosol	42.2	43.91
KRH35744	Soybean	cytosol	42.2	43.91
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	40.83	43.84
PGSC0003DMT400050493	Potato	cytosol	40.6	43.81
KRH32856	Soybean	cytosol	42.2	43.81
Solyc01g007020.2.1	Tomato	cytosol	40.83	43.63
PGSC0003DMT400054949	Potato	cytosol	40.6	43.6
KRH72176	Soybean	cytosol	41.74	43.54
PGSC0003DMT400055051	Potato	cytosol	38.76	42.89
PGSC0003DMT400055050	Potato	cytosol	38.53	42.86
KRH25324	Soybean	cytosol	35.55	42.7
Zm00001d019807_P001	Maize	extracellular	9.17	42.55
Bra033430.1-P	Field mustard	cytosol	41.05	42.22
Bra006925.1-P	Field mustard	cytosol	41.74	41.84
Bra012803.1-P	Field mustard	cytosol	40.37	41.61
PGSC0003DMT400054947	Potato	cytosol	28.67	41.39
AT3G52450.1	Thale cress	cytosol	41.28	41.38
Solyc01g009330.1.1	Tomato	cytosol	40.14	41.08
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	16.51	40.22
PGSC0003DMT400054948	Potato	cytosol	26.15	40.0
PGSC0003DMT400038197	Potato	cytosol	39.91	38.33
Zm00001d016764_P001	Maize	extracellular	29.82	31.1
Zm00001d050712_P001	Maize	extracellular, plastid	28.9	30.81
Zm00001d044734_P001	Maize	mitochondrion	30.96	30.54
Zm00001d002498_P001	Maize	cytosol	28.67	30.12
Zm00001d017976_P001	Maize	mitochondrion	31.19	30.09
Zm00001d026040_P001	Maize	cytosol	27.75	29.58
GSMUA_Achr9P29630_001	Banana	cytosol	40.37	28.48
Zm00001d028374_P001	Maize	mitochondrion	29.13	28.41
Zm00001d003624_P001	Maize	cytosol	25.69	28.0
Zm00001d017671_P001	Maize	cytosol	25.92	26.59
Zm00001d016719_P001	Maize	cytosol	25.92	26.34
Zm00001d050689_P001	Maize	cytosol	25.46	25.87
Zm00001d030251_P001	Maize	cytosol	26.15	25.68
Zm00001d028294_P001	Maize	cytosol	26.83	25.49
Zm00001d048008_P001	Maize	cytosol	26.61	25.05
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	25.23	24.77
Zm00001d023480_P001	Maize	cytosol	29.13	22.72
Zm00001d038280_P001	Maize	cytosol	23.17	22.35
Zm00001d000044_P001	Maize	cytosol	11.47	21.64

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:103627250	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6HA26	ProteinID:AQK71559.1
InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0016874	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF62	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002210B83	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d016730	EnsemblPlants:Zm00001d016730_P001	EnsemblPlants:Zm00001d016730_T001	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase PUB23

Coordinates

chr5:+:174398003..174399313

Molecular Weight (calculated)

47118.0 Da

IEP (calculated)

8.073

GRAVY (calculated)

0.003

Length

436 amino acids

Sequence
(BLAST)

001: MAMELASSYS AAEIPHYFLC PISLEVMRDP VTLATGITYD RASIERWLFT DGHATCPVTR RALAPAEMDA TPNHTLRRLI QAWCAAHQVE RFPTPRQPLD
101: SCRVAALLDQ GRHGGAAAAL REIKAVIAES ERNRRCVEAT PGAVDFLASL VAKDSSADRS PSKRASSQQD ADDGDSLGEE VLDSPTFMSS PAEDALGVLY
201: SLKPSERSLA QIMEREGNFL DTLASVLRRP SYRTRAYGIL LLKAMTEVMT PAQFMMVSAD LVQEVVLVVS DRVSSKAVRA ALHVLCRLCP WGRNRVKAVQ
301: AGAVAALVEL LLDEGGSRVT ELAVVAIDHL CGCAEGRSDL VAHPAGLAVL SKKVMRVSAA ATESAVRALH AVARHSPTPS VRQEMLAVGV VAKLLLVLQT
401: NAGERAGLRV KEMLKTHARV WKDSPCLQTH RGSYPC

Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)

001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA

Arabidopsis Description

PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.