Factsheet for Zm00001d030251_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38738	Sorghum	plastid	85.36	76.72
Zm00001d028374_P001	Maize	mitochondrion	46.17	45.86
Zm00001d044734_P001	Maize	mitochondrion	45.05	45.25
GSMUA_Achr11P...	Banana	mitochondrion	41.44	43.29
GSMUA_Achr7P18640_001	Banana	mitochondrion	36.26	42.48
GSMUA_Achr6P11310_001	Banana	cytosol	36.04	42.11
GSMUA_Achr6P02470_001	Banana	mitochondrion	36.04	42.11
GSMUA_Achr10P...	Banana	cytosol	35.36	41.76
Zm00001d017976_P001	Maize	mitochondrion	41.22	40.49
VIT_01s0011g06140.t01	Wine grape	mitochondrion	38.29	38.46
GSMUA_Achr3P02030_001	Banana	plastid	36.26	38.42
Zm00001d019807_P001	Maize	extracellular	8.11	38.3
KRH72959	Soybean	cytosol, mitochondrion	34.23	34.7
KRH17309	Soybean	cytosol, mitochondrion	34.01	34.4
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	34.68	34.15
KRG97963	Soybean	mitochondrion	33.11	34.11
KRH30918	Soybean	mitochondrion	33.33	34.02
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	33.33	34.02
Solyc01g005160.2.1	Tomato	mitochondrion	34.23	33.78
KRH48691	Soybean	cytosol	33.11	33.64
Bra025442.1-P	Field mustard	mitochondrion	33.11	33.56
CDY27655	Canola	mitochondrion	33.11	33.56
CDX99694	Canola	mitochondrion	32.88	33.33
CDY16432	Canola	cytosol	31.98	33.18
Bra039752.1-P	Field mustard	cytosol	31.53	33.18
KRH39018	Soybean	mitochondrion	32.43	32.88
CDY50319	Canola	cytosol	31.53	32.79
Solyc04g008100.1.1	Tomato	cytosol	31.98	32.13
PGSC0003DMT400073836	Potato	cytosol	29.95	31.74
PGSC0003DMT400075778	Potato	mitochondrion	31.31	31.45
Solyc11g006030.1.1	Tomato	cytosol	30.18	31.16
AT1G66160.1	Thale cress	cytosol	29.28	30.16
Zm00001d042738_P001	Maize	cytosol	27.48	29.9
Zm00001d050712_P001	Maize	extracellular, plastid	27.48	29.83
Zm00001d016764_P001	Maize	extracellular	27.7	29.43
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	24.1	29.08
CDX92016	Canola	mitochondrion	23.87	28.8
AT3G02840.1	Thale cress	mitochondrion	24.55	28.76
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	25.23	28.57
Bra001067.1-P	Field mustard	mitochondrion	23.42	28.26
CDY28714	Canola	mitochondrion	23.2	27.47
Bra040605.1-P	Field mustard	mitochondrion	23.2	27.47
CDY51529	Canola	mitochondrion	22.97	27.2
Zm00001d016730_P001	Maize	cytosol	25.68	26.15
Zm00001d026040_P001	Maize	cytosol	23.87	25.92
Zm00001d003624_P001	Maize	cytosol	23.2	25.75
Zm00001d002498_P001	Maize	cytosol	23.65	25.3
Zm00001d017671_P001	Maize	cytosol	24.1	25.18
Zm00001d028294_P001	Maize	cytosol	25.9	25.05
Zm00001d016719_P001	Maize	cytosol	24.1	24.94
Zm00001d050689_P001	Maize	cytosol	23.87	24.71
Zm00001d048008_P001	Maize	cytosol	25.68	24.62
Zm00001d003745_P001	Maize	nucleus	24.1	23.88
Zm00001d038280_P001	Maize	cytosol	23.2	22.79
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	22.07	22.07
Zm00001d000044_P001	Maize	cytosol	10.81	20.78
Zm00001d023480_P001	Maize	cytosol	23.87	18.96

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:103644871	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6KB93	InterPro:ARM-like
InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	ProteinID:ONM00631.1	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0004DEC8EE	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d030251	EnsemblPlants:Zm00001d030251_P001	EnsemblPlants:Zm00001d030251_T001	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

U-box domain-containing protein 21

Coordinates

chr1:+:116811699..116813033

Molecular Weight (calculated)

46921.0 Da

IEP (calculated)

7.202

GRAVY (calculated)

0.252

Length

444 amino acids

Sequence
(BLAST)

001: MSSQQWWTAP AKEEAPPPPE FMCPITLDLM QDPVAAPTGI TYDRAAIESW LLAGGQRACP VTHGELRAGD LVPNHTLRRL IQDWCATSRC CCSVDRVRVP
101: ATPEEAAVAE LESATRAGDA ERCAAAARGV RRLARAAEQN RRRLESAGAA RALSMAFTSF ADTADAAVAI DVLDAVLAAL VLVMPMDEEA ILVVGSSSAS
201: VARLVAVAAN GDLHRRLQAV VVIREIISLS VYRGTACTIG LCANTEAIAR VLVKTIRDAI CPPATRACLV AAYHLARSGE SAATRLSVAG IVIVLVELLV
301: DADRSTAEKA LAALDAALAS RDGRARARAD ALVMPVLVKK MFCVSDAATA LVVSALLRIC KKCPEDDEDG TAVAGAARRH AIVEALQLGA LQKVLLLLQA
401: GCREETKGNA TQLLRLMVRY QGCGECVDAM DVRGLKRDTA ILTG

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.