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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039752.1-P Field mustard cytosol 73.32 74.88
CDY16432 Canola cytosol 74.25 74.77
CDY50319 Canola cytosol 73.09 73.77
AT5G37490.1 Thale cress cytosol, nucleus, peroxisome 57.54 57.01
KRH30918 Soybean mitochondrion 46.17 45.75
KRH17309 Soybean cytosol, mitochondrion 45.94 45.1
KRG97963 Soybean mitochondrion 45.01 45.01
PGSC0003DMT400073836 Potato cytosol 42.92 44.15
KRH72959 Soybean cytosol, mitochondrion 44.78 44.06
Solyc11g006030.1.1 Tomato cytosol 43.16 43.26
GSMUA_Achr10P... Banana cytosol 35.96 41.22
GSMUA_Achr6P11310_001 Banana cytosol 33.41 37.89
AT3G02840.1 Thale cress mitochondrion 33.18 37.73
GSMUA_Achr11P... Banana mitochondrion 37.12 37.65
GSMUA_Achr6P02470_001 Banana mitochondrion 31.32 35.53
TraesCS4B01G228700.1 Wheat mitochondrion 36.19 35.45
GSMUA_Achr7P18640_001 Banana mitochondrion 30.63 34.83
HORVU4Hr1G064070.1 Barley mitochondrion 35.5 34.77
TraesCS4D01G229900.1 Wheat mitochondrion 35.5 34.77
Os03t0240600-01 Rice plastid 35.27 34.16
EER92576 Sorghum mitochondrion 35.96 34.14
Zm00001d017976_P001 Maize mitochondrion 35.73 34.07
Zm00001d028374_P001 Maize mitochondrion 35.27 34.0
Os06t0248500-00 Rice mitochondrion 35.5 33.77
TraesCS7B01G105600.1 Wheat mitochondrion 34.8 33.63
TraesCS7D01G201600.1 Wheat mitochondrion 33.87 33.03
EES05563 Sorghum mitochondrion 34.8 32.47
GSMUA_Achr3P02030_001 Banana plastid 31.55 32.46
Zm00001d044734_P001 Maize mitochondrion 33.18 32.35
KXG19704 Sorghum mitochondrion 33.87 31.81
Os02t0738200-01 Rice mitochondrion 33.64 31.8
TraesCS6A01G312600.1 Wheat mitochondrion 33.41 31.65
TraesCS6B01G342800.1 Wheat mitochondrion 32.95 31.28
TraesCS6D01G292200.1 Wheat mitochondrion 32.71 31.06
HORVU7Hr1G040790.2 Barley plastid 34.57 30.53
Zm00001d030251_P001 Maize cytosol 30.16 29.28
HORVU6Hr1G077120.1 Barley plastid 33.87 28.52
AT2G35930.1 Thale cress cytosol 26.68 27.98
TraesCS5A01G088600.1 Wheat cytosol 21.81 27.49
AT3G52450.1 Thale cress cytosol 27.15 26.9
AT3G19380.1 Thale cress cytosol, golgi, plastid 26.22 26.84
KXG38738 Sorghum plastid 30.63 26.72
AT1G49780.1 Thale cress cytoskeleton, cytosol, vacuole 25.52 26.13
AT5G64660.1 Thale cress cytosol 24.59 25.24
AT5G09800.1 Thale cress cytosol 23.43 24.69
AT3G11840.1 Thale cress cytosol 25.06 23.68
AT3G49810.1 Thale cress cytosol 24.36 23.44
AT3G18710.1 Thale cress cytosol 22.04 22.89
AT5G65920.1 Thale cress cytosol 23.43 22.75
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1EntrezGene:842931ProteinID:AAG51307.1ProteinID:AEE34470.1
InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT1G66160EnsemblPlantsGene:AT1G66160RefSeq:AT1G66160TAIR:AT1G66160
RefSeq:AT1G66160-TAIR-GEnsemblPlants:AT1G66160.1TAIR:AT1G66160.1Symbol:ATCMPG1EMBL:AY034913EMBL:AY063104
EMBL:AY087421Unigene:At.23473GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009987GO:GO:0010200
GO:GO:0016567GO:GO:0016740GO:GO:0019538InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
RefSeq:NP_564866.1PFAM:PF04564PO:PO:0000037PO:PO:0000293PO:PO:0001054PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281
PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF61UniProt:Q9C8D1SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniParc:UPI000009C780InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
Coordinates
chr1:+:24637196..24638608
Molecular Weight (calculated)
48215.1 Da
IEP (calculated)
8.320
GRAVY (calculated)
-0.094
Length
431 amino acids
Sequence
(BLAST)
001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.