Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G64660.1 | Thale cress | cytosol | 72.37 | 70.48 |
| AT3G18710.1 | Thale cress | cytosol | 58.68 | 57.83 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 53.55 | 53.16 |
| KRH43397 | Soybean | cytosol | 54.28 | 53.11 |
| KRH59546 | Soybean | cytosol | 54.03 | 52.87 |
| KRH53869 | Soybean | cytosol | 50.61 | 49.64 |
| PGSC0003DMT400065698 | Potato | cytosol | 47.19 | 45.95 |
| Solyc11g005700.1.1 | Tomato | cytosol | 46.94 | 45.71 |
| KRH36899 | Soybean | cytosol | 40.34 | 44.47 |
| GSMUA_Achr8P30420_001 | Banana | mitochondrion | 28.61 | 42.86 |
| GSMUA_Achr10P... | Banana | plastid | 31.78 | 33.85 |
| GSMUA_Achr5P01020_001 | Banana | cytosol | 32.76 | 33.42 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 35.94 | 33.33 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 35.94 | 33.33 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 35.94 | 33.33 |
| Zm00001d016719_P001 | Maize | cytosol | 34.47 | 32.87 |
| Zm00001d050689_P001 | Maize | cytosol | 33.99 | 32.4 |
| GSMUA_Achr6P18140_001 | Banana | cytosol | 32.03 | 32.03 |
| Zm00001d025379_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 34.72 | 31.98 |
| EES05205 | Sorghum | cytosol | 34.72 | 31.35 |
| OQU81548 | Sorghum | mitochondrion | 34.23 | 31.32 |
| Os04t0418500-01 | Rice | plastid | 34.23 | 31.04 |
| HORVU2Hr1G074130.1 | Barley | plastid | 36.92 | 29.15 |
| Os02t0540700-00 | Rice | plastid | 35.45 | 28.71 |
| AT2G35930.1 | Thale cress | cytosol | 25.43 | 25.3 |
| AT3G52450.1 | Thale cress | cytosol | 26.41 | 24.83 |
| AT5G37490.1 | Thale cress | cytosol, nucleus, peroxisome | 25.67 | 24.14 |
| AT3G19380.1 | Thale cress | cytosol, golgi, plastid | 24.69 | 23.99 |
| Zm00001d038280_P001 | Maize | cytosol | 26.41 | 23.89 |
| Os05t0439400-01 | Rice | plasma membrane | 25.92 | 23.45 |
| AT1G66160.1 | Thale cress | cytosol | 24.69 | 23.43 |
| KXG22102 | Sorghum | mitochondrion | 26.16 | 23.41 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 25.92 | 23.4 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 25.92 | 23.4 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 25.67 | 23.18 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 25.67 | 23.18 |
| AT1G49780.1 | Thale cress | cytoskeleton, cytosol, vacuole | 23.72 | 23.04 |
| AT3G02840.1 | Thale cress | mitochondrion | 20.05 | 21.64 |
| AT3G49810.1 | Thale cress | cytosol | 23.47 | 21.43 |
| AT5G65920.1 | Thale cress | cytosol | 23.23 | 21.4 |
| AT3G11840.1 | Thale cress | cytosol | 22.49 | 20.18 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | EntrezGene:830840 | UniProt:A0A178UA46 | ProteinID:AED91448.1 |
| EMBL:AK175195 | EMBL:AK176549 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT5G09800 | EnsemblPlantsGene:AT5G09800 |
| RefSeq:AT5G09800 | TAIR:AT5G09800 | RefSeq:AT5G09800-TAIR-G | EnsemblPlants:AT5G09800.1 | TAIR:AT5G09800.1 | ProteinID:BAB09538.1 |
| EMBL:BT010883 | ProteinID:CAB89350.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0010200 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | RefSeq:NP_196542.1 | ProteinID:OAO89531.1 | PFAM:PF04564 | PO:PO:0000084 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007123 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF20 | UniProt:Q9LXE3 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00000A6DA8 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
PUB28U-box domain-containing protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXE3]
Coordinates
chr5:-:3042904..3044546
Molecular Weight (calculated)
45777.8 Da
IEP (calculated)
7.999
GRAVY (calculated)
0.033
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSDDLYITT VPCFFKCPIS LDVMKSPVSL STGVTYDRVS IQRWLDDGNN TCPATMQILQ NKEFVPNLTL HRLIDHWSDS INRRADSESP ESDTPTRDEI
101: NAAIERFRIE NDARSKILRF ARESDENREF LAGKDDFVAM LVDLISDSRN FSDSQLLLVG EAVKILSMIR RKIFDRRRLS NLILTNGGDC LTSFFLLIKR
201: GNPKLKIDCS AVLEFIAVDA ESKLIIAKGE GLVTEIIKLI SSDSDSSLIE ANLSLLIAIA SSKRVKLALI REKLVTKLTS LLTDPTTSVS VTEKCLKLLE
301: AISSCKEGRS EICDGVCVET VVNKLMKVST AATEHAVTVL WSVCYLFKEK KAQDAVIRIN GVTKILLLLQ SNCSLTVRHM LTDLLKVFKV NSRSCLSVYE
401: TKTTHIMPF
101: NAAIERFRIE NDARSKILRF ARESDENREF LAGKDDFVAM LVDLISDSRN FSDSQLLLVG EAVKILSMIR RKIFDRRRLS NLILTNGGDC LTSFFLLIKR
201: GNPKLKIDCS AVLEFIAVDA ESKLIIAKGE GLVTEIIKLI SSDSDSSLIE ANLSLLIAIA SSKRVKLALI REKLVTKLTS LLTDPTTSVS VTEKCLKLLE
301: AISSCKEGRS EICDGVCVET VVNKLMKVST AATEHAVTVL WSVCYLFKEK KAQDAVIRIN GVTKILLLLQ SNCSLTVRHM LTDLLKVFKV NSRSCLSVYE
401: TKTTHIMPF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.